Analysis tools for microarray data

Every tool is described in detail on its own help page. The help page is divided into four parts: General description, Parameters, Details on how the tool works, and Output where the results are described. The Parameters part contains the list of parameters, their possible values (1-100) and their default values [10].

  1. Normalization
  2. Quality control
  3. Preprocessing
  4. Statistics
  5. Clustering
  6. Annotation
  7. Pathways
  8. Promoter analysis
  9. Copy number aberrations
  10. Visualization
  11. Utilities