This tools retrieves promoters for the specified list of genes.
This tool retrieves upstream sequences for the specified genes. It needs to access the chip-specific annotations, so if you have not specified the chiptype during normalization of, e.g., Illumina data, it will not work. RefSeq IDs are used for retrieving upstream sequences constructed and annotated by UCSC genome browser staff. The same promoter sequences can be downloaded as a single FastA-formatted file from UCSC Golden Path folder. User can define how long promoter sequences are retrieved:
Human Mouse Rat Drosophila Yeast Short 1000 bp 1000 bp 1000 bp 1000 bp 500 bp Medium 2000 bp 2000 bp 2000 bp 2000 bp 1000 bp Long 5000 bp 5000 bp 5000 bp 5000 bp 2500 bp
A text file containing promoters in FastA-format (suitable for further analyses outside Chipster) is returned.