Chipster

Announcement archive

6.-8.4.2022 Bulk RNA-seq data analysis, including QuantSeq.
8.4.2022 QuantSeq FWD UMI 3' RNA-seq data analysis
22.5.2021 Microbial community analysis with Chipster.
20.11.2020 Java-based Chipster (v3) was closed, please use Chipster Web App (v4).
14.10.2020 Lecture videos of single cell RNA-seq data analysis with Chipster course
20.5.2020 Instructions for moving data from Puhti to Chipster
14.5.2020 Chipster Web App video
01.4.2020 Lecture videos of 16S microbiome data analysis course
24.1.2020 Version 3.16.3 released
20.11.2020 EGI webinar Using and setting up Chipster
3.11.2020 Intro webinar to MOOC Single-cell RNA-seq data analysis using Chipster
27.10.2020 MOOC Single-cell RNA-seq data analysis using Chipster
27.-28.10.2020 Single-cell RNA-seq data analysis using Chipster, University of Luxembourg
21.4.2020 Microbial community analysis of 16S data, virtual course
05.3.2020 RNA-seq data analysis, CSC
10.1.2020 Community analysis of amplicon sequencing data, Ruokavirasto
8.10.2019 Version 3.16 released
24.9.2019 Single cell RNA-seq data analysis, CSC
11.9.2019 Detecting differentially expressed genes with RNA-seq, InCoB
2.-3.9.2019 RNA-seq data analysis, University of Oulu
17.6.2019 Single cell RNA-seq data analysis, IGC
14.-15.3.2019 Single cell RNA-seq data analysis, CSC
9.4.2019 Version 3.15 released
6.3.2019 RNA-seq data analysis, CSC
11.12.2018 Community analysis of amplicon sequencing data, Evira
24.9.2018 Video tutorials for single cell RNA-seq data analysis
19.9.2018 Single cell RNA-seq data analysis, CSC
13.9.2018 Version 3.14 released
4.-5.9.2018 RNA-seq data analysis, University of Oulu
8.8.2018 Community analysis of amplicon sequencing data, JyU
26.-28.6.2018 Expression data analysis, DKFZ
13.6.2018 Version 3.13 released
17.4.2018 Course materials available!
9.2.2018 Single cell RNA-seq data analysis, CSC
16.1.2018 Webinar: VirusDetect pipeline
6.-10.11.2017 RNA-seq data analysis, Virus detection using small RNA-seq data, UoM
25.10.2017 Version 3.12 released
29.9.2017 Single cell RNA-seq data analysis, CSC
13.-15.9.2017 Variant analysis with GATK, CSC
24.4.2017 RNA-seq data analysis with Chipster, BTK, Turku
3.4.2017 Community analysis of amplicon sequencing data, CSC
6.3.2017 RNA-seq data analysis with Chipster, CSC
10.10.2017 06:30-09:00 (UTC +3) Network maintenance, expected downtime 15 minutes
7.2.2017 9:35-12:00 (UTC+2) Network issues on the compute nodes may have interrupted some jobs.
14.-15.2.2017 RNA-seq data analysis, University of Oulu
13.1.2017 Single cell RNA-seq tool workshop, Biomedicum
19.12.2016 Version 3.11 released
23.-25.11.2016 Expression data analysis, DKFZ Heidelberg
22.11.2016 Version 3.10 released
17.11.2016 Virus detection using small RNA-seq data, University of Helsinki
14.-15.11.2016 RNA-seq data analysis, VLSCI, Melbourne
10.11.2016 RNA-seq data analysis, QUT, Brisbane
11.10.2016 Webinar: Beginner's introduction to RNA-seq data analysis using Chipster
10.10.2016 Instructions for stranded RNA-seq data
6.9.2016 Chipster presentation in ECCB
25.8.2016 Variant analysis course videos
13.6.2016 Variant analysis, CSC
26.5.2016 13:00 - 13:15 EEST Maintenance service break
25.5.2016 Chipster tutorial on nanotoxicology analysis
23.5.2016 Version 3.9 released
22.3.2016 Version 3.8 released
14.1.2016 Version 3.7 released
13.-15.1.2016 Expression data analysis, DKFZ Heidelberg
1.12.2015 RNA-seq data analysis, University of Helsinki
16.11.2015 RNA-seq data analysis, Cape Town
11.11.2015 NGS data analysis, Bari
9.11.2015 RNA-seq data analysis, CSC
29.10.2015 RNA-seq data analysis, DPPS
26.-27.10.2015 RNA-seq data analysis, Biomedicum
2.10.2015 Version 3.6 released
29.9 and 5.10.2015 Variant analysis, Biomedicum
18.9.2015 RNA-seq data analysis, Ljubljana
14.7.2015 Chipster presentation TT15 at the ISMB in Dublin.
10.7.2015 Chipster tutorial videos now in YouTube
10.7.2015 Version 3.5 released
1.-2.6.2016 RNA-seq and ChIP-seq data analysis, Prague
26.5.2015 RNA-seq data analysis, University of Turku
25.5.2015 RNA-seq data analysis, BTK
6.-7.5.2015 Expression data analysis, University of Oulu
28.4.2016 Introduction to Chipster, University of Helsinki
26.4.2016 RNA-seq data analysis, BTK
20.4.2015 Version 3.4 released
13.3.2015 Version 3.3 released
5.3.2015 SeqAhead training school on NGS data analysis, Riga
24.2.2015 RNA-seq data analysis of multivariate experiments, Biomedicum
16.2.2016 RNA-seq data analysis, Prague (eLearning)
10.2.2015 RNA-seq data analysis, Biomedicum
9.2.2015 Version 3.2 released
9.2.2016 Variant analysis, University of Helsinki
5.2.2016 RNA-seq data analysis, CSC
20.1.2015 RNA-seq data analysis, SciLifeLab, Uppsala
4.12.2014 RNA-seq data analysis, SLU, Uppsala
6.11.2014 Version 3.1 released
28.-30.10.2014 Microarray data analysis, DKFZ Heidelberg
16.-19.9.2014 ChIP- and DNase-seq data analysis workshop, CSC
27.8.2014 RNA-seq data analysis, University of Eastern Finland
13.8.2014 Version 3.0 released with many new features!
13.8.2014 9:30-11:30 Maintenance service break
31.7.2014 RNA-seq data analysis, EADV, Helsinki
22.5.2014 RNA-seq data analysis, University of Turku
13.5.2014 Version 2.12 released
31.3.-3.4.2014 CSC spring school in bioinformatics, CSC
19.3.2014 RNA-seq data analysis, IGC, Lissabon
24.-25.2.2014 Microarray data analysis, University of Oulu
11.2.2014 Sequence analysis, University of Turku
10.2.2014 New module with EMBOSS and BLAST tools
8.-10.1.2014 RNA-seq data analysis workshop, CSC
3.12.2013 Chipster Tool editor is available for developers
4.12.2013 Version 2.9 released
11.10.2013 RNA-seq data analysis, University of Gothenburg
12.9.2013 Microarray data analysis, Biomedicum Helsinki
30.8.2013 Version 2.8 released
21.7.2013 Chipster presentation (TT13) and poster (D20) in ISMB
28.6.2013 Version 2.7 released
12.-14.6.2013 Microarray and NGS data analysis, DKFZ, Heidelberg
30.5.2013 Version 2.6 released
30.5.2013 Maintenance service break 30th May 2013 at 9:00 - 9:40
14.5.2013 RNA-seq and ChIP-seq tutorial, CIPF, Valencia
11.4.2013 Version 2.5 released
11.4.2013 Maintenance service break 11th April 2013 at 6:30 - 7:00
6.3.2013 Bioinformatics winter school, CSC
28.2.2013 NGS data analysis, University of Kuopio
4.2.2013 Version 2.4 released.
21.-22.11.2012 NGS data analysis, Oulu
8.1.2013 10.00-12.55 Service break due to disk hardware problems
10.-14.12.2012 Microarray and NGS data analysis, CPGR, Cape Town
13.11.2012 Version 2.3 released. Also the server VM image and installation package are available.
18.10.2012 Microarray data analysis with Chipster, Jyväskylä
27.9.2012 Version 2.2.0 released, read more
12.9.2012 Version 2.1.0, read more
12.9.2012 Server virtual machine images and installation packages for version 2.1.0 released.
12.9.2012 09.30-11.30 Maintenance service break
1.9.2012 16.30-20.50 Service break due to server issue
17.7.2012 Come to meet us at the ISMB 2012. Poster J40, talk TT37 (3:30 pm, room 201A)
1.7.2012 4:30-11:30 Service break due to server issue (Linux leap second bug)
13.-15.6.2012 NGS data analysis with Chipster, CSC
28.5.2012 9:30-10:30 Maintenance service break
3.-4.5.2012 NGS data analysis with Chipster, BTK, Turku
26.-27.4.2012 NGS data analysis with Chipster, CSC
23.3.2012 9:30-11:30 Maintenance service break
21.-22.3.2012 Microarray data analysis with Chipster, Oulu
28.2.2012 NGS data analysis with Chipster, University of Turku
14-16.2.2012 Data analysis with Chipster, DKFZ, Heidelberg
27.1.2012 9:00-11:30 Maintenance service break
24.1.2012 Chipster 2.0 with NGS functionality released
29.11.2011 9:00-12:00 Maintenance service break
Chipster paper published. Please cite Chipster: User-friendly analysis software for microarray and other high-throughput data Kallio et al., BMC Genomics 2011, 12:507
2-3.11.2011 NGS data analysis with Chipster, CSC, Finland
12.10.2011 Next Generation Sequencing Workshop, University of Bari, Italy
3-4.10.2011 Advanced Bioinformatics: Computational Systems Biology, ICGEB, Trieste, Italy
6.9.2011 Next Generation Sequencing technology in ecological and evolutionary research, University of Jyväskylä, Finland
4.9.2011 EMBO Global exchange lecture course Next Generation Sequencing for Africa, University of Nairobi
1.9.2011 FEBS Practical course on gene expression regulation and data integration, University of Debrecen
28.9.2011 from 14:30 to 20:40 Service beak due to hardware issues
18.7.2011 ISMB Techology track presentation TT31 Chipster 2.0: User-friendly NGS data analysis software with interactive genome browser.
23.5.2011 Server installation packages for version 1.4.7 released.
16.5.2011 Version 1.4.7 released. Read what is new.
30.3.2011 from 10 to 11 Scheduled service break due to system maintenance
4.2.2011 Short maintenance service break at 8:00
14.1.2011 aCGH data analysis, CSC, Finland
12.-13.1.2011 Microarray data analysis (inc integration of miRNA and gene expression data), CSC, Finland
16.12.2010 Server installation packages for version 1.4.6 released.
13.12.2010 Course on ChIP-seq data analysis, CSC
7.12.2010 Version 1.4.6 released. Read what is new.
25.11.2010 from 10:00 to 12:00 Scheduled service break due to version update and software maintenance
23.11.2010 Microarray data analysis course, University of Helsinki
14.10.2010 Version 1.4.5 released. Read what is new.
5.10.2010 Chipster file server upgraded, institutions with strict firewall policies may need to change configuration.
14.9.2010 service break due to hardware issue
12.7.2010 Presentation and poster on Chipster NGS functionality in ISMB 2010.
02.6.2010 Workshop on next generation sequencing data analysis
4.-5.5.2010 Chipster training at Turku Centre for Biotechnology
20.4.2010 Server installation packages for version 1.4.4 released.
20.4.2010 Version 1.4.4 released. Read what is new.
9.4.2010 version 1.4.3 released. Read what is new.
6.4.2011 Sequence analysis with Embster, CSC, Finland
23.-25.3.2010 Chipster training at DKFZ Heidelberg
18.2.2010 - 19.2.2010 short breaks in service due to network issues
11.2.2010 version 1.4.2 released. Read what is new.
20.1.2010 version 1.4.1 released. Read what is new
10.12.2009 server installation packages for version 1.4.0 released.
8.12.2009 Chipster course on miRNA data analysis in Biomedicum Helsinki
11.11.2009 version 1.4.0 released. Read what is new
11.11.2009 from 15:00 to 17:00 scheduled service break due to release of new version
21.9.2009 Chipster course at Karolinska Institutet, Stockholm
21.7.2009 server installation packages for version 1.3.0 released.
16.7.2009 version 1.3.0 released, read what is new
16.7.2009 from 9.00 to 12.00 scheduled service break due to release of new version
27.6.2009Chipster at ISMB 2009
- Presentations: BOSC, Technology Track
- Posters: New Chipster release with extended functionality, EMBRACE web services and Chipster
8.-10.6.2009 Chipster course in DKFZ Heidelberg
20.5.2009 from 10.00 to 11.00 scheduled maintenance break due to operating system updates
31.3.2009 server installation packages for version 1.2.4 released
27.3.2009 version update to 1.2.4
27.3.2009 from 9.00 to 11.00 scheduled service break due to release of new version
5.2.2009 version update to 1.2.3
5.2.2009 from 9.00 to 11.00 scheduled service break due to release of new version
14.-16.1.2009 Chipster course in DKFZ Heidelberg
15.1.2009 server installation packages for version 1.2.3 released
9.1.2009 server installation packages for version 1.2.2 released
8.1.2009 version update to 1.2.2
8.1.2009 from 9.00 to 12.00 scheduled service break due to release of new version
27.-28.11.2008 Chipster course in University of Sydney (pdf)
11.11.2008 version update to 1.2.1
21.10.2008 server installation packages for version 1.2.0 released
13.10.2008 version 1.2.0 released (for new features see release notes)
30.-31.10.2008 Chipster course at CSC
13.10.2008 from 9.00 to 11.30 scheduled service break due to release of new version
18.-24.9.2008 Chipster course in Karolinska Institutet, Stockholm
3.9.2008 Chipster presented at MGED11 (poster)
2.9.2008 from 7.30 to 7.45 short maintenance break due to operating system updates
1.9.2008 update 1.1.3 released (includes patches to hierarchical clustering, wizard and phenodata functionality)
21.8.2008 from 11.18 to 18.58 short delays due to server hardware updates
weeks 34 and 35 Chipster demo sessions on different campuses (read more)
15.8.2008 new and improved installation packages available for local installations
14.8.2008 update 1.1.2 released
6.8.2008 from 13.00 to 13.30 scheduled service break due to server update
21.7.2008 Chipster presented at ISMB (slides) and BOSC (slides)
16.6.2008 from 14.00 to 16.00 scheduled service break due to hardware update
13.6.2008 update 1.1.1 released
5.6.2008 Chipster course at CSC
2.6.2008 version 1.1.0 released
2.6.2008 from 12.00 to 18.00 scheduled service break due to release of new version
16.4.2008 update 1.0.4 released
11.4.2008 update 1.0.3 released
26.3.2008 update 1.0.2 released
26.3.2008 from 13.00 to 16.00 scheduled service break due to release of new version
20.3.2008 from 9.00 to 10.00 service partly unavailable due to hardware issues
20.3.2008 update 1.0.1 released
14.3.2008 version 1.0.0 released
14.3.2008 from 16.00 to 18.00 scheduled service break due to release of new version
28.2.2008 version 0.3.1 released
28.2.2008 from 15.00 to 17.00 scheduled service break due to release of new version
22.2.2008 locally installable version 0.3.0 released for testing
27.12.2007 from 10.00 to 16.00 scheduled service break due to server maintenance
10.12.2007 update 0.2.2 released
30.11.2007 Chipster course at CSC
29.11.2007 update 0.2.1 released
28.11.2007 version 0.2.0 released
28.11.2007 from 8.00 to 10.00 scheduled service break due to release of new version
29.10.2007 from 16.00 to 17.00 scheduled service break
1.10.2007 from 9.00 to 13.00 scheduled service break due to server maintenance
28.9.2007 from 9.00 to 9.05 service momentarily unavailable due to server filesystem issues
5.9.2007 Chipster presented at MGED10 in Brisbane
31.8.2007 version 0.1.3 released

All times are in EET/EEST.