Welcome to Chipster
Chipster is a user-friendly software for analyzing high-throughput data such as NGS and microarrays. It contains over 450 analysis tools and a large collection of reference genomes. Users can save and share automatic analysis workflows, and visualize data interactively using for example the built-in genome browser. Chipster's client software uses Java Web Start to install itself automatically, and it connects to computing servers for the actual analysis. Chipster is open source, and the server environment is available as a virtual machine image free of charge. If you would like to use Chipster running on CSC's server, you need a user account.
Launch Chipster v3.16.3
...or launch with more memory: 3 GB or 6 GB
If you have trouble launching Chipster, read this
News and resources:
- 24.1.2020 Version 3.16.3 released
- 01.9.2019 New web-based Chipster available for testing.
- Lecture videos from single cell RNA-seq data analysis course
- RNA-seq resources:
- Lecture videos
- Step-by-step instructions for differential expression analysis
- RNA-seq data analysis guidebook with Chipster instructions
- Archive
Training:
- 21.4.2020 Microbial community analysis of 16S data, CSC
- 05.3.2020 RNA-seq data analysis, CSC
- 10.1.2020 Community analysis of amplicon sequencing data, Ruokavirasto
- 24.9.2019 Single cell RNA-seq data analysis, CSC
- 11.9.2019 Detecting differentially expressed genes with RNA-seq, InCoB
Maintenance:
- 28.1.2020 Service break of the new web-based Chipster due to CSC's container cloud maintenance. The Java based Chipster works fine.