Welcome to Chipster

Chipster is a user-friendly analysis software for high-throughput data such as RNA-seq and single-cell RNA-seq. Chipster provides a web interface to over 500 analysis tools, and the actual analysis jobs run on the server side making use of CSC's computing environment.

If you would like to use Chipster hosted by CSC, you need a user account. Please note that Chipster is also available for local server installation free of charge.


News and resources:


  • Thursday 6.4.2023 9 - 10 (UTC+3) Chipster service break.
  • Monday 28.2.2023 18:25 - Tuesday 29.2.2023 16:00 (UTC+3) Jobs were slow to start. The issue has been fixed now.