Welcome to Chipster
Chipster is a user-friendly software for analyzing high-throughput data such as NGS and microarrays. It contains over 360 analysis tools and a large collection of reference genomes. Users can save and share automatic analysis workflows, and visualize data interactively using for example the built-in genome browser. Chipster's client software uses Java Web Start to install itself automatically, and it connects to computing servers for the actual analysis. Chipster is open source, and the server environment is available as a virtual machine image free of charge. If you would like to use Chipster running on CSC's server, you need a user account.
Launch Chipster v3.12
...or launch with more memory: 3 GB or 6 GB
If you have trouble launching Chipster, read this
News and resources:
- 17.4.2018 Course materials available!
- 17.4.2018 RNA-seq tutorial for differential expression analysis
- 25.10.2017 Version 3.12 released
- 19.8.2014 RNA-seq data analysis guidebook with Chipster instructions
- News archive
Training:
- 9.2.2018 Single cell RNA-seq data analysis using Chipster, CSC
- 16.1.2018 Webinar: VirusDetect pipeline
- 6.-10.11.2017 RNA-seq data analysis, Virus detection using small RNA-seq data, UoM
- 29.9.2017 Single cell RNA-seq data analysis, CSC
- 13.-15.9.2017 Variant analysis with GATK, CSC
- 24.4.2017 RNA-seq data analysis with Chipster, BTK, Turku
- 3.4.2017 Community analysis of amplicon sequencing data, CSC
- 6.3.2017 RNA-seq data analysis with Chipster, CSC
- 14.-15.2.2017 RNA-seq data analysis, University of Oulu
- 13.1.2017 Single cell RNA-seq tool workshop, Biomedicum
- 23.-25.11.2016 Expression data analysis, DKFZ Heidelberg