Welcome to Chipster

Chipster is a user-friendly analysis software for high-throughput data such as RNA-seq and single cell RNA-seq. It contains over 450 analysis tools and a large collection of reference genomes. Chipster version 4 is a Web application which runs on your browser.

If you would like to use Chipster running on CSC's server, you need a user account. Please note that the v4 server is also available for local installations free of charge.

Launch Chipster v4 Launch Chipster v4
Chipster web application, no Java needed (watch introductory video)


  • Wednesday 8.12.2021 9:00-10:00 (UTC+3) Chipster service break.
  • Tuesday 7.12.2021 13:10 (UTC+3) Unscheduled service break. Sessions can be viewed but new jobs cannot be started. Estimated duration 2 hours.
  • Wednesday 24.11.2021 9:00-10:00 (UTC+3) Chipster service break. Update 9:40: done.
  • 10.11.2021 16:15 - 11.11.2021 09:15 (UTC+3) Service break due to underlying platform issue.


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