Welcome to Chipster

Chipster is a user-friendly analysis software for high-throughput data such as RNA-seq and single cell RNA-seq. It contains over 450 analysis tools and a large collection of reference genomes. Chipster version 4 is a Web application which runs on your browser.

If you would like to use Chipster running on CSC's server, you need a user account. Please note that the v4 server is also available for local installations free of charge.

Launch Chipster v4 Launch Chipster v4
Chipster web application, no Java needed (watch introductory video)

Training:

News and resources:

Maintenance:

  • 19.11.2020 11:00-11:20 (UTC+2) Chipster v4 unscheduled service break. A problem in our object storage service prevented one of the Chipster services from starting.
  • 18.11.2020 11:05-13:40 (UTC+2) Chipster v4 unscheduled service break. A problem in our object storage service prevented some Chipster services from starting.