Welcome to Chipster

Chipster is a user-friendly analysis software for high-throughput data such as RNA-seq and single cell RNA-seq. It contains over 450 analysis tools and a large collection of reference genomes. Chipster version 4 is a Web application which runs on your browser.

If you would like to use Chipster running on CSC's server, you need a user account. Please note that the v4 server is also available for local installations free of charge.

Launch Chipster v4 Launch Chipster v4
Chipster web application, no Java needed (watch introductory video)


News and resources:


  • Tuesday 23.8.2022 9 - 10 (UTC+3) Chipster service break.
  • Tuesday 16.8.2022 9 - 10 (UTC+3) Chipster service break. Update: cancelled.