Welcome to Chipster
Chipster is a user-friendly analysis software for high-throughput data such as RNA-seq and single cell RNA-seq. It contains over 450 analysis tools and a large collection of reference genomes. Chipster version 4 is a Web application which runs on your browser.
If you would like to use Chipster running on CSC's server, you need a user account. Please note that the v4 server is also available for local installations free of charge.
Launch Chipster v4
Chipster web application, no Java needed (watch introductory video)
Training:
- 20.11.2020 EGI webinar Using and setting up Chipster
- 3.11.2020 Intro webinar to MOOC Single-cell RNA-seq data analysis using Chipster
- 27.10.2020 MOOC Single-cell RNA-seq data analysis using Chipster
- 27.-28.10.2020 Single-cell RNA-seq data analysis using Chipster, University of Luxembourg
- 21.4.2020 Microbial community analysis of 16S data, virtual course
- 05.3.2020 RNA-seq data analysis, CSC
- 10.1.2020 Community analysis of amplicon sequencing data, Ruokavirasto
News and resources:
- 20.11.2020 Java-based Chipster (v3) was closed, please use Chipster Web App (v4).
- 14.10.2020 Lecture videos of single cell RNA-seq data analysis with Chipster course
- 20.5.2020 Instructions for moving data from Puhti to Chipster
- 14.5.2020 Chipster Web App video
- 01.4.2020 Lecture videos of 16S microbiome data analysis course
- 24.1.2020 Version 3.16.3 released
- Lecture videos of advanced single cell RNA-seq data analysis course
- RNA-seq resources:
- Lecture videos
- Step-by-step instructions for differential expression analysis
- RNA-seq data analysis guidebook with Chipster instructions
- Archive
Maintenance:
- 19.11.2020 11:00-11:20 (UTC+2) Chipster v4 unscheduled service break. A problem in our object storage service prevented one of the Chipster services from starting.
- 18.11.2020 11:05-13:40 (UTC+2) Chipster v4 unscheduled service break. A problem in our object storage service prevented some Chipster services from starting.