Welcome to Chipster

Chipster is a user-friendly analysis software for high-throughput data such as RNA-seq and single cell RNA-seq. It contains over 450 analysis tools and a large collection of reference genomes. Chipster version 4 is a Web application which runs on your browser.

If you would like to use Chipster running on CSC's server, you need a user account. Please note that Chipster is available for local server installation free of charge.

Launch Chipster v4 Launch Chipster v4
Chipster web application, no Java needed (watch introductory video)


News and resources:


  • Wednesday 28.9.2022 9 - 10 (UTC+3) Chipster service break.
  • Monday 19.9.2022 9 - 10 (UTC+3) Chipster service break. Update 10:00: done.
  • Wednesday 31.8.2022 14:00 - Wednesday 7.9.2022 9:45 Starting new jobs was slow or failed. One of our storage services needed to synchronize its data.