Welcome to Chipster
Chipster is a user-friendly analysis software for high-throughput data such as RNA-seq and single cell RNA-seq. It contains over 450 analysis tools and a large collection of reference genomes. Chipster version 4 is a Web application which runs on your browser.
If you would like to use Chipster running on CSC's server, you need a user account. Please note that Chipster is available for local server installation free of charge.
Launch Chipster v4
Chipster web application, no Java needed (watch introductory video)
Training:
- 25.10.2022 Spatial transcriptomics (Visium) data analysis
- 7.10.2022 Single-cell RNA-seq data analysis
- 30.6.2021 MOOC Single-cell RNA-seq data analysis using Chipster, instructions on how to get started
News and resources:
- Analysis of QuantSeq 3' UMI RNA-seq data enabled
- Chipster introduction video
- Instructions for moving data from Puhti to Chipster
- Video on how to convert tables to Chipster format and create phenodata file
- Lecture videos of advanced single cell RNA-seq data analysis course
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RNA-seq resources:
- Lecture videos
- Step-by-step instructions for differential expression analysis
- RNA-seq data analysis guidebook with Chipster instructions
- Archive
Maintenance:
- Wednesday 28.9.2022 9 - 10 (UTC+3) Chipster service break.
- Monday 19.9.2022 9 - 10 (UTC+3) Chipster service break. Update 10:00: done.
- Wednesday 31.8.2022 14:00 - Wednesday 7.9.2022 9:45 Starting new jobs was slow or failed. One of our storage services needed to synchronize its data.