CLUSTER-BUSTER Compiled on Dec 1 2006 >NM_030754 (1000 bp) CLUSTER 1 Location: 875 to 964 Score: 6.64 MEF2A: 2.81 NF-kappaB: 0.698 ZNF42_5-13: 0.529 RELA: 0.377 REL: 0.106 Dof2: 0.0856 MNB1A: 0.08 PBF: 0.0768 SPIB: 0.0607 SPI1: 0.0482 ZNF42_1-4: 0.0464 AGL3: 0.0437 NFKB1: 0.0342 Klf4: 0.0325 RUSH1-alfa: 0.0313 TCF11-MafG: 0.0223 c-ETS: 0.0211 ID1: 0.0203 TAL1-TCF3: 0.0183 HMG-1: 0.0163 Dorsal_2: 0.0145 Hunchback: 0.0134 Pax5: 0.0125 Dorsal_1: 0.0124 SP1: 0.011 HMG-IY: 0.0105 RUNX1: 0.00979 MA0021: 0.00919 En1: 0.00889 deltaEF1: 0.00865 ELK1: 0.00829 E74A: 0.00817 Gata1: 0.00809 Pax2: 0.00804 Macho-1: 0.00785 GATA2: 0.00757 SU_h: 0.00679 ARR10: 0.00616 GABPA: 0.0059 Spz1: 0.00448 SOX9: 0.00436 Pbx: 0.00428 Staf: 0.00423 bZIP910: 0.00399 Snail: 0.00396 Broad-complex_4: 0.0039 YY1: 0.0037 HNF4: 0.00361 Myf: 0.00345 RORA: 0.0031 NR3C1: 0.00277 Foxa2: 0.00274 FOXL1: 0.00267 TFAP2A: 0.00259 Broad-complex_3: 0.00255 Broad-complex_2: 0.00252 HAND1-TCF3: 0.00247 Agamous: 0.0022 ESR1: 0.00215 ELK4: 0.00205 MafB: 0.00184 NR2F1: 0.00175 Ubx: 0.00174 FOXC1: 0.00149 MAX: 0.00135 GATA3: 0.00134 Broad-complex_1: 0.00125 cEBP: 0.00119 Evi1: 0.0011 Pax4: 0.0011 GAMYB: 0.00107 E2F1: 0.00104 Nkx2-5: 0.00104 Bapx1: 0.00103 Mycn: 0.000864 TBP: 0.000835 SRY: 0.000753 CF2-II: 0.000748 Arnt-Ahr: 0.000716 TEAD: 0.000673 CFI-USP: 0.000658 CREB1: 0.000652 Chop-cEBP: 0.000627 USF1: 0.000621 NHLH1: 0.000603 Arnt: 0.000563 Gfi: 0.000515 RREB1: 0.000506 FOXD1: 0.000458 Pax6: 0.000449 Myb: 0.000421 SQUA: 0.000405 Prrx2: 0.00036 Sox5: 0.000326 Sox17: 0.000292 MYC-MAX: 0.000289 Fos: 0.000288 IRF1: 0.000208 Athb-1: 0.000198 HLF: 0.000189 ABI4: 0.000182 MYB.ph3: 0.000167 IRF2: 0.000103 TCF1: 8.44e-05 FOXF2: 8.2e-05 Foxq1: 5.14e-05 Foxd3: 4.59e-05 Hox11-CTF1: 4.41e-05 RXR-VDR: 4.22e-05 TP53: 3.82e-05 T: 3.72e-05 Ar: 2.24e-05 Roaz: 2.2e-05 SRF: 2.11e-05 FOXI1: 1.88e-05 NF-Y: 1.75e-05 bZIP911: 1.68e-05 NFIL3: 1.33e-05 ATHB5: 5.66e-06 RORA1: 1.44e-06 PPARG: 9.86e-07 PPARG-RXRA: 5.69e-08 NR1H2-RXR: 3.84e-08 GTAGGGGAAAtgacctgcaGGGACTTTCCCCAgggaccacatccAGCTTTtcttccctcccaagagaccagcaaggctcaCTATAAATAG ZNF42_5-13 875 884 + 8.87 gtaggggaaa ZNF42_1-4 877 882 + 6.43 agggga SPIB 877 883 + 6.98 aggggaa Dorsal_2 894 903 + 6.98 gggactttcc NF-kappaB 894 903 + 11.3 gggactttcc NF-kappaB 894 903 - 6.13 ggaaagtccc REL 894 903 + 9.51 gggactttcc NFKB1 894 904 + 7.82 gggactttccc NFKB1 894 904 - 7.61 gggaaagtccc RELA 894 903 + 10.8 gggactttcc NF-kappaB 895 904 - 7.38 gggaaagtcc MA0021 896 901 - 6.52 aaagtc PBF 897 901 - 6.05 aaagt ZNF42_1-4 901 906 - 6.21 tgggga Dof2 919 924 - 6.92 aaagct MNB1A 920 924 - 6.86 aaagc PBF 920 924 - 6.82 aaagc AGL3 955 964 + 9.56 ctataaatag AGL3 955 964 - 8.73 ctatttatag MEF2A 955 964 + 9.23 ctataaatag MEF2A 955 964 - 13 ctatttatag FOXL1 956 963 + 6.33 tataaata >NM_005203 (1000 bp) CLUSTER 1 Location: 716 to 916 Score: 9.14 MEF2A: 2.13 T: 1.1 Foxd3: 0.35 RREB1: 0.278 Broad-complex_1: 0.246 Pax2: 0.211 E74A: 0.205 Bapx1: 0.205 FOXI1: 0.197 SP1: 0.196 FOXF2: 0.153 SPI1: 0.103 Foxq1: 0.0943 Klf4: 0.0927 ESR1: 0.075 ZNF42_1-4: 0.0686 Macho-1: 0.0674 ABI4: 0.0668 c-ETS: 0.0592 GABPA: 0.0568 TBP: 0.046 TFAP2A: 0.0457 MNB1A: 0.0446 FOXL1: 0.0424 Foxa2: 0.041 Myf: 0.037 SQUA: 0.0359 ZNF42_5-13: 0.0302 Snail: 0.0289 PBF: 0.0232 Broad-complex_4: 0.0204 Dof2: 0.0174 En1: 0.0171 Arnt-Ahr: 0.0166 RUSH1-alfa: 0.0154 deltaEF1: 0.0145 IRF1: 0.0144 HMG-1: 0.0141 MA0021: 0.0124 MAX: 0.0117 Chop-cEBP: 0.0112 ELK1: 0.0103 ID1: 0.0102 MafB: 0.0101 HNF4: 0.0101 USF1: 0.00961 Spz1: 0.00917 TCF11-MafG: 0.00913 Arnt: 0.00904 ARR10: 0.00872 GATA3: 0.0085 HMG-IY: 0.0085 Pax5: 0.00844 E2F1: 0.00819 SRY: 0.00811 Gata1: 0.00796 NFKB1: 0.00778 Broad-complex_2: 0.00754 Fos: 0.00735 Nkx2-5: 0.00676 Mycn: 0.00657 FOXD1: 0.00644 REL: 0.00625 SPIB: 0.00568 RELA: 0.00542 FOXC1: 0.00531 Dorsal_1: 0.00516 Hunchback: 0.00512 Staf: 0.0051 Pax4: 0.00507 Dorsal_2: 0.00506 TEAD: 0.00453 Myb: 0.00428 AGL3: 0.00409 YY1: 0.00388 HAND1-TCF3: 0.00369 GATA2: 0.00365 cEBP: 0.0035 ELK4: 0.00349 TCF1: 0.00339 NHLH1: 0.00321 Sox5: 0.00321 Broad-complex_3: 0.00306 CFI-USP: 0.00292 RXR-VDR: 0.00216 CF2-II: 0.00213 Ubx: 0.00203 HLF: 0.00184 SOX9: 0.00182 CREB1: 0.00171 PPARG: 0.00164 MYB.ph3: 0.0016 MYC-MAX: 0.00142 Sox17: 0.0014 Gfi: 0.0014 NF-kappaB: 0.00137 GAMYB: 0.00135 NFIL3: 0.0013 Pax6: 0.00126 SU_h: 0.00115 Agamous: 0.00114 RORA: 0.00099 bZIP910: 0.000625 NR2F1: 0.000612 Hox11-CTF1: 0.000545 IRF2: 0.000483 Prrx2: 0.000465 NR3C1: 0.000408 RUNX1: 0.000316 Pbx: 0.00023 Athb-1: 0.000205 bZIP911: 0.000128 Ar: 0.000126 Roaz: 8.88e-05 TAL1-TCF3: 6.25e-05 TP53: 3.98e-05 RORA1: 3.62e-05 NF-Y: 3.03e-05 SRF: 2.21e-05 ATHB5: 1.89e-05 Evi1: 7.14e-06 PPARG-RXRA: 1.23e-06 NR1H2-RXR: 3.61e-07 CTCGGTGTGAAtccggagAAAGAGAGGGaagtgcagcgccagcTCCACTCCACACCCCCTTCCTGCCTATAAATAACCCCAAgTGTCACTTCAaagaggacggggagcgcggcagaggggctcccgggccggcgggctggggccgccggaCCTGCTCACCACGCCCCCcaccctgggcGAGTTTGCATAAATAAACAAATC T 716 726 + 9.57 ctcggtgtgaa Klf4 734 743 + 6.04 aaagagaggg Bapx1 759 767 - 6.76 tggagtgga RREB1 760 779 + 8.09 ccactccacacccccttcct GABPA 772 781 - 6.44 gcaggaaggg E74A 774 780 - 8.08 caggaag ELK1 774 783 - 6.4 aggcaggaag SPI1 774 779 - 7.05 aggaag c-ETS 774 779 + 6.71 cttcct Broad-complex_1 775 788 - 7.2 tttataggcaggaa TBP 775 789 - 6.88 atttataggcaggaa TBP 777 791 - 7.47 ttatttataggcagg SQUA 778 791 - 6.95 ttatttataggcag TCF1 780 793 - 7.58 ggttatttataggc AGL3 782 791 + 6.39 ctataaataa AGL3 782 791 - 7.33 ttatttatag Broad-complex_4 782 792 + 7.98 ctataaataac CF2-II 782 791 + 7.2 ctataaataa FOXI1 782 793 - 10.1 ggttatttatag MEF2A 782 791 + 9.45 ctataaataa MEF2A 782 791 - 13.4 ttatttatag TBP 782 796 + 10.2 ctataaataacccca Dorsal_1 783 794 - 6.94 gggttatttata FOXL1 783 790 + 8.66 tataaata FOXL1 783 790 - 7.45 tatttata Foxq1 783 793 - 7.65 ggttatttata FOXD1 784 791 + 6.52 ataaataa Macho-1 789 797 - 6.11 ttggggtta Pax2 799 806 + 7.68 tgtcactt Bapx1 800 808 - 6.86 tgaagtgac ESR1 866 883 + 6.36 cctgctcaccacgccccc SP1 873 882 - 7.18 ggggcgtggt cEBP 894 905 - 7.25 ttatgcaaactc NFIL3 895 905 - 6.08 ttatgcaaact TBP 895 909 - 7.3 ttatttatgcaaact HLF 896 907 + 6.85 gtttgcataaat SQUA 896 909 - 8.74 ttatttatgcaaac FOXF2 897 910 + 10.9 tttgcataaataaa FOXL1 897 904 + 7.99 tttgcata HMG-IY 898 913 + 6.72 ttgcataaataaacaa TCF1 899 912 - 7.7 tgtttatttatgca Foxd3 900 911 - 9.1 gtttatttatgc FOXI1 900 911 - 8.05 gtttatttatgc HMG-IY 900 915 + 8.02 gcataaataaacaaat Foxa2 900 911 - 7.3 gtttatttatgc Hunchback 900 909 + 8.13 gcataaataa SQUA 900 913 + 7.51 gcataaataaacaa TBP 900 914 + 8.35 gcataaataaacaaa FOXF2 901 914 + 12.7 cataaataaacaaa FOXL1 901 908 + 6.07 cataaata Foxq1 901 911 - 6.54 gtttatttatg HMG-IY 901 916 + 7.14 cataaataaacaaatc Broad-complex_1 902 915 + 8.92 ataaataaacaaat FOXD1 902 909 + 6.72 ataaataa SQUA 902 915 + 11.3 ataaataaacaaat SRY 902 910 + 7.48 ataaataaa TBP 902 916 + 6.64 ataaataaacaaatc Broad-complex_1 903 916 + 13.2 taaataaacaaatc Broad-complex_3 903 913 + 7.44 taaataaacaa Hunchback 903 912 + 6.22 taaataaaca Broad-complex_2 904 911 - 6.22 gtttattt Broad-complex_4 904 914 + 10.4 aaataaacaaa Foxd3 904 915 - 13.6 atttgtttattt FOXI1 904 915 - 12.9 atttgtttattt Foxa2 904 915 - 11.6 atttgtttattt Hunchback 904 913 + 6.2 aaataaacaa ID1 904 915 - 6.1 atttgtttattt Foxq1 905 915 - 12 atttgtttatt FOXD1 906 913 + 8.63 ataaacaa SRY 906 914 + 9.24 ataaacaaa >NM_080798 (1000 bp) CLUSTER 1 Location: 716 to 916 Score: 9.14 MEF2A: 2.13 T: 1.1 Foxd3: 0.35 RREB1: 0.278 Broad-complex_1: 0.246 Pax2: 0.211 E74A: 0.205 Bapx1: 0.205 FOXI1: 0.197 SP1: 0.196 FOXF2: 0.153 SPI1: 0.103 Foxq1: 0.0943 Klf4: 0.0927 ESR1: 0.075 ZNF42_1-4: 0.0686 Macho-1: 0.0674 ABI4: 0.0668 c-ETS: 0.0592 GABPA: 0.0568 TBP: 0.046 TFAP2A: 0.0457 MNB1A: 0.0446 FOXL1: 0.0424 Foxa2: 0.041 Myf: 0.037 SQUA: 0.0359 ZNF42_5-13: 0.0302 Snail: 0.0289 PBF: 0.0232 Broad-complex_4: 0.0204 Dof2: 0.0174 En1: 0.0171 Arnt-Ahr: 0.0166 RUSH1-alfa: 0.0154 deltaEF1: 0.0145 IRF1: 0.0144 HMG-1: 0.0141 MA0021: 0.0124 MAX: 0.0117 Chop-cEBP: 0.0112 ELK1: 0.0103 ID1: 0.0102 MafB: 0.0101 HNF4: 0.0101 USF1: 0.00961 Spz1: 0.00917 TCF11-MafG: 0.00913 Arnt: 0.00904 ARR10: 0.00872 GATA3: 0.0085 HMG-IY: 0.0085 Pax5: 0.00844 E2F1: 0.00819 SRY: 0.00811 Gata1: 0.00796 NFKB1: 0.00778 Broad-complex_2: 0.00754 Fos: 0.00735 Nkx2-5: 0.00676 Mycn: 0.00657 FOXD1: 0.00644 REL: 0.00625 SPIB: 0.00568 RELA: 0.00542 FOXC1: 0.00531 Dorsal_1: 0.00516 Hunchback: 0.00512 Staf: 0.0051 Pax4: 0.00507 Dorsal_2: 0.00506 TEAD: 0.00453 Myb: 0.00428 AGL3: 0.00409 YY1: 0.00388 HAND1-TCF3: 0.00369 GATA2: 0.00365 cEBP: 0.0035 ELK4: 0.00349 TCF1: 0.00339 NHLH1: 0.00321 Sox5: 0.00321 Broad-complex_3: 0.00306 CFI-USP: 0.00292 RXR-VDR: 0.00216 CF2-II: 0.00213 Ubx: 0.00203 HLF: 0.00184 SOX9: 0.00182 CREB1: 0.00171 PPARG: 0.00164 MYB.ph3: 0.0016 MYC-MAX: 0.00142 Sox17: 0.0014 Gfi: 0.0014 NF-kappaB: 0.00137 GAMYB: 0.00135 NFIL3: 0.0013 Pax6: 0.00126 SU_h: 0.00115 Agamous: 0.00114 RORA: 0.00099 bZIP910: 0.000625 NR2F1: 0.000612 Hox11-CTF1: 0.000545 IRF2: 0.000483 Prrx2: 0.000465 NR3C1: 0.000408 RUNX1: 0.000316 Pbx: 0.00023 Athb-1: 0.000205 bZIP911: 0.000128 Ar: 0.000126 Roaz: 8.88e-05 TAL1-TCF3: 6.25e-05 TP53: 3.98e-05 RORA1: 3.62e-05 NF-Y: 3.03e-05 SRF: 2.21e-05 ATHB5: 1.89e-05 Evi1: 7.14e-06 PPARG-RXRA: 1.23e-06 NR1H2-RXR: 3.61e-07 CTCGGTGTGAAtccggagAAAGAGAGGGaagtgcagcgccagcTCCACTCCACACCCCCTTCCTGCCTATAAATAACCCCAAgTGTCACTTCAaagaggacggggagcgcggcagaggggctcccgggccggcgggctggggccgccggaCCTGCTCACCACGCCCCCcaccctgggcGAGTTTGCATAAATAAACAAATC T 716 726 + 9.57 ctcggtgtgaa Klf4 734 743 + 6.04 aaagagaggg Bapx1 759 767 - 6.76 tggagtgga RREB1 760 779 + 8.09 ccactccacacccccttcct GABPA 772 781 - 6.44 gcaggaaggg E74A 774 780 - 8.08 caggaag ELK1 774 783 - 6.4 aggcaggaag SPI1 774 779 - 7.05 aggaag c-ETS 774 779 + 6.71 cttcct Broad-complex_1 775 788 - 7.2 tttataggcaggaa TBP 775 789 - 6.88 atttataggcaggaa TBP 777 791 - 7.47 ttatttataggcagg SQUA 778 791 - 6.95 ttatttataggcag TCF1 780 793 - 7.58 ggttatttataggc AGL3 782 791 + 6.39 ctataaataa AGL3 782 791 - 7.33 ttatttatag Broad-complex_4 782 792 + 7.98 ctataaataac CF2-II 782 791 + 7.2 ctataaataa FOXI1 782 793 - 10.1 ggttatttatag MEF2A 782 791 + 9.45 ctataaataa MEF2A 782 791 - 13.4 ttatttatag TBP 782 796 + 10.2 ctataaataacccca Dorsal_1 783 794 - 6.94 gggttatttata FOXL1 783 790 + 8.66 tataaata FOXL1 783 790 - 7.45 tatttata Foxq1 783 793 - 7.65 ggttatttata FOXD1 784 791 + 6.52 ataaataa Macho-1 789 797 - 6.11 ttggggtta Pax2 799 806 + 7.68 tgtcactt Bapx1 800 808 - 6.86 tgaagtgac ESR1 866 883 + 6.36 cctgctcaccacgccccc SP1 873 882 - 7.18 ggggcgtggt cEBP 894 905 - 7.25 ttatgcaaactc NFIL3 895 905 - 6.08 ttatgcaaact TBP 895 909 - 7.3 ttatttatgcaaact HLF 896 907 + 6.85 gtttgcataaat SQUA 896 909 - 8.74 ttatttatgcaaac FOXF2 897 910 + 10.9 tttgcataaataaa FOXL1 897 904 + 7.99 tttgcata HMG-IY 898 913 + 6.72 ttgcataaataaacaa TCF1 899 912 - 7.7 tgtttatttatgca Foxd3 900 911 - 9.1 gtttatttatgc FOXI1 900 911 - 8.05 gtttatttatgc HMG-IY 900 915 + 8.02 gcataaataaacaaat Foxa2 900 911 - 7.3 gtttatttatgc Hunchback 900 909 + 8.13 gcataaataa SQUA 900 913 + 7.51 gcataaataaacaa TBP 900 914 + 8.35 gcataaataaacaaa FOXF2 901 914 + 12.7 cataaataaacaaa FOXL1 901 908 + 6.07 cataaata Foxq1 901 911 - 6.54 gtttatttatg HMG-IY 901 916 + 7.14 cataaataaacaaatc Broad-complex_1 902 915 + 8.92 ataaataaacaaat FOXD1 902 909 + 6.72 ataaataa SQUA 902 915 + 11.3 ataaataaacaaat SRY 902 910 + 7.48 ataaataaa TBP 902 916 + 6.64 ataaataaacaaatc Broad-complex_1 903 916 + 13.2 taaataaacaaatc Broad-complex_3 903 913 + 7.44 taaataaacaa Hunchback 903 912 + 6.22 taaataaaca Broad-complex_2 904 911 - 6.22 gtttattt Broad-complex_4 904 914 + 10.4 aaataaacaaa Foxd3 904 915 - 13.6 atttgtttattt FOXI1 904 915 - 12.9 atttgtttattt Foxa2 904 915 - 11.6 atttgtttattt Hunchback 904 913 + 6.2 aaataaacaa ID1 904 915 - 6.1 atttgtttattt Foxq1 905 915 - 12 atttgtttatt FOXD1 906 913 + 8.63 ataaacaa SRY 906 914 + 9.24 ataaacaaa >NM_080799 (1000 bp) CLUSTER 1 Location: 716 to 916 Score: 9.14 MEF2A: 2.13 T: 1.1 Foxd3: 0.35 RREB1: 0.278 Broad-complex_1: 0.246 Pax2: 0.211 E74A: 0.205 Bapx1: 0.205 FOXI1: 0.197 SP1: 0.196 FOXF2: 0.153 SPI1: 0.103 Foxq1: 0.0943 Klf4: 0.0927 ESR1: 0.075 ZNF42_1-4: 0.0686 Macho-1: 0.0674 ABI4: 0.0668 c-ETS: 0.0592 GABPA: 0.0568 TBP: 0.046 TFAP2A: 0.0457 MNB1A: 0.0446 FOXL1: 0.0424 Foxa2: 0.041 Myf: 0.037 SQUA: 0.0359 ZNF42_5-13: 0.0302 Snail: 0.0289 PBF: 0.0232 Broad-complex_4: 0.0204 Dof2: 0.0174 En1: 0.0171 Arnt-Ahr: 0.0166 RUSH1-alfa: 0.0154 deltaEF1: 0.0145 IRF1: 0.0144 HMG-1: 0.0141 MA0021: 0.0124 MAX: 0.0117 Chop-cEBP: 0.0112 ELK1: 0.0103 ID1: 0.0102 MafB: 0.0101 HNF4: 0.0101 USF1: 0.00961 Spz1: 0.00917 TCF11-MafG: 0.00913 Arnt: 0.00904 ARR10: 0.00872 GATA3: 0.0085 HMG-IY: 0.0085 Pax5: 0.00844 E2F1: 0.00819 SRY: 0.00811 Gata1: 0.00796 NFKB1: 0.00778 Broad-complex_2: 0.00754 Fos: 0.00735 Nkx2-5: 0.00676 Mycn: 0.00657 FOXD1: 0.00644 REL: 0.00625 SPIB: 0.00568 RELA: 0.00542 FOXC1: 0.00531 Dorsal_1: 0.00516 Hunchback: 0.00512 Staf: 0.0051 Pax4: 0.00507 Dorsal_2: 0.00506 TEAD: 0.00453 Myb: 0.00428 AGL3: 0.00409 YY1: 0.00388 HAND1-TCF3: 0.00369 GATA2: 0.00365 cEBP: 0.0035 ELK4: 0.00349 TCF1: 0.00339 NHLH1: 0.00321 Sox5: 0.00321 Broad-complex_3: 0.00306 CFI-USP: 0.00292 RXR-VDR: 0.00216 CF2-II: 0.00213 Ubx: 0.00203 HLF: 0.00184 SOX9: 0.00182 CREB1: 0.00171 PPARG: 0.00164 MYB.ph3: 0.0016 MYC-MAX: 0.00142 Sox17: 0.0014 Gfi: 0.0014 NF-kappaB: 0.00137 GAMYB: 0.00135 NFIL3: 0.0013 Pax6: 0.00126 SU_h: 0.00115 Agamous: 0.00114 RORA: 0.00099 bZIP910: 0.000625 NR2F1: 0.000612 Hox11-CTF1: 0.000545 IRF2: 0.000483 Prrx2: 0.000465 NR3C1: 0.000408 RUNX1: 0.000316 Pbx: 0.00023 Athb-1: 0.000205 bZIP911: 0.000128 Ar: 0.000126 Roaz: 8.88e-05 TAL1-TCF3: 6.25e-05 TP53: 3.98e-05 RORA1: 3.62e-05 NF-Y: 3.03e-05 SRF: 2.21e-05 ATHB5: 1.89e-05 Evi1: 7.14e-06 PPARG-RXRA: 1.23e-06 NR1H2-RXR: 3.61e-07 CTCGGTGTGAAtccggagAAAGAGAGGGaagtgcagcgccagcTCCACTCCACACCCCCTTCCTGCCTATAAATAACCCCAAgTGTCACTTCAaagaggacggggagcgcggcagaggggctcccgggccggcgggctggggccgccggaCCTGCTCACCACGCCCCCcaccctgggcGAGTTTGCATAAATAAACAAATC T 716 726 + 9.57 ctcggtgtgaa Klf4 734 743 + 6.04 aaagagaggg Bapx1 759 767 - 6.76 tggagtgga RREB1 760 779 + 8.09 ccactccacacccccttcct GABPA 772 781 - 6.44 gcaggaaggg E74A 774 780 - 8.08 caggaag ELK1 774 783 - 6.4 aggcaggaag SPI1 774 779 - 7.05 aggaag c-ETS 774 779 + 6.71 cttcct Broad-complex_1 775 788 - 7.2 tttataggcaggaa TBP 775 789 - 6.88 atttataggcaggaa TBP 777 791 - 7.47 ttatttataggcagg SQUA 778 791 - 6.95 ttatttataggcag TCF1 780 793 - 7.58 ggttatttataggc AGL3 782 791 + 6.39 ctataaataa AGL3 782 791 - 7.33 ttatttatag Broad-complex_4 782 792 + 7.98 ctataaataac CF2-II 782 791 + 7.2 ctataaataa FOXI1 782 793 - 10.1 ggttatttatag MEF2A 782 791 + 9.45 ctataaataa MEF2A 782 791 - 13.4 ttatttatag TBP 782 796 + 10.2 ctataaataacccca Dorsal_1 783 794 - 6.94 gggttatttata FOXL1 783 790 + 8.66 tataaata FOXL1 783 790 - 7.45 tatttata Foxq1 783 793 - 7.65 ggttatttata FOXD1 784 791 + 6.52 ataaataa Macho-1 789 797 - 6.11 ttggggtta Pax2 799 806 + 7.68 tgtcactt Bapx1 800 808 - 6.86 tgaagtgac ESR1 866 883 + 6.36 cctgctcaccacgccccc SP1 873 882 - 7.18 ggggcgtggt cEBP 894 905 - 7.25 ttatgcaaactc NFIL3 895 905 - 6.08 ttatgcaaact TBP 895 909 - 7.3 ttatttatgcaaact HLF 896 907 + 6.85 gtttgcataaat SQUA 896 909 - 8.74 ttatttatgcaaac FOXF2 897 910 + 10.9 tttgcataaataaa FOXL1 897 904 + 7.99 tttgcata HMG-IY 898 913 + 6.72 ttgcataaataaacaa TCF1 899 912 - 7.7 tgtttatttatgca Foxd3 900 911 - 9.1 gtttatttatgc FOXI1 900 911 - 8.05 gtttatttatgc HMG-IY 900 915 + 8.02 gcataaataaacaaat Foxa2 900 911 - 7.3 gtttatttatgc Hunchback 900 909 + 8.13 gcataaataa SQUA 900 913 + 7.51 gcataaataaacaa TBP 900 914 + 8.35 gcataaataaacaaa FOXF2 901 914 + 12.7 cataaataaacaaa FOXL1 901 908 + 6.07 cataaata Foxq1 901 911 - 6.54 gtttatttatg HMG-IY 901 916 + 7.14 cataaataaacaaatc Broad-complex_1 902 915 + 8.92 ataaataaacaaat FOXD1 902 909 + 6.72 ataaataa SQUA 902 915 + 11.3 ataaataaacaaat SRY 902 910 + 7.48 ataaataaa TBP 902 916 + 6.64 ataaataaacaaatc Broad-complex_1 903 916 + 13.2 taaataaacaaatc Broad-complex_3 903 913 + 7.44 taaataaacaa Hunchback 903 912 + 6.22 taaataaaca Broad-complex_2 904 911 - 6.22 gtttattt Broad-complex_4 904 914 + 10.4 aaataaacaaa Foxd3 904 915 - 13.6 atttgtttattt FOXI1 904 915 - 12.9 atttgtttattt Foxa2 904 915 - 11.6 atttgtttattt Hunchback 904 913 + 6.2 aaataaacaa ID1 904 915 - 6.1 atttgtttattt Foxq1 905 915 - 12 atttgtttatt FOXD1 906 913 + 8.63 ataaacaa SRY 906 914 + 9.24 ataaacaaa >NM_080800 (1000 bp) CLUSTER 1 Location: 716 to 916 Score: 9.14 MEF2A: 2.13 T: 1.1 Foxd3: 0.35 RREB1: 0.278 Broad-complex_1: 0.246 Pax2: 0.211 E74A: 0.205 Bapx1: 0.205 FOXI1: 0.197 SP1: 0.196 FOXF2: 0.153 SPI1: 0.103 Foxq1: 0.0943 Klf4: 0.0927 ESR1: 0.075 ZNF42_1-4: 0.0686 Macho-1: 0.0674 ABI4: 0.0668 c-ETS: 0.0592 GABPA: 0.0568 TBP: 0.046 TFAP2A: 0.0457 MNB1A: 0.0446 FOXL1: 0.0424 Foxa2: 0.041 Myf: 0.037 SQUA: 0.0359 ZNF42_5-13: 0.0302 Snail: 0.0289 PBF: 0.0232 Broad-complex_4: 0.0204 Dof2: 0.0174 En1: 0.0171 Arnt-Ahr: 0.0166 RUSH1-alfa: 0.0154 deltaEF1: 0.0145 IRF1: 0.0144 HMG-1: 0.0141 MA0021: 0.0124 MAX: 0.0117 Chop-cEBP: 0.0112 ELK1: 0.0103 ID1: 0.0102 MafB: 0.0101 HNF4: 0.0101 USF1: 0.00961 Spz1: 0.00917 TCF11-MafG: 0.00913 Arnt: 0.00904 ARR10: 0.00872 GATA3: 0.0085 HMG-IY: 0.0085 Pax5: 0.00844 E2F1: 0.00819 SRY: 0.00811 Gata1: 0.00796 NFKB1: 0.00778 Broad-complex_2: 0.00754 Fos: 0.00735 Nkx2-5: 0.00676 Mycn: 0.00657 FOXD1: 0.00644 REL: 0.00625 SPIB: 0.00568 RELA: 0.00542 FOXC1: 0.00531 Dorsal_1: 0.00516 Hunchback: 0.00512 Staf: 0.0051 Pax4: 0.00507 Dorsal_2: 0.00506 TEAD: 0.00453 Myb: 0.00428 AGL3: 0.00409 YY1: 0.00388 HAND1-TCF3: 0.00369 GATA2: 0.00365 cEBP: 0.0035 ELK4: 0.00349 TCF1: 0.00339 NHLH1: 0.00321 Sox5: 0.00321 Broad-complex_3: 0.00306 CFI-USP: 0.00292 RXR-VDR: 0.00216 CF2-II: 0.00213 Ubx: 0.00203 HLF: 0.00184 SOX9: 0.00182 CREB1: 0.00171 PPARG: 0.00164 MYB.ph3: 0.0016 MYC-MAX: 0.00142 Sox17: 0.0014 Gfi: 0.0014 NF-kappaB: 0.00137 GAMYB: 0.00135 NFIL3: 0.0013 Pax6: 0.00126 SU_h: 0.00115 Agamous: 0.00114 RORA: 0.00099 bZIP910: 0.000625 NR2F1: 0.000612 Hox11-CTF1: 0.000545 IRF2: 0.000483 Prrx2: 0.000465 NR3C1: 0.000408 RUNX1: 0.000316 Pbx: 0.00023 Athb-1: 0.000205 bZIP911: 0.000128 Ar: 0.000126 Roaz: 8.88e-05 TAL1-TCF3: 6.25e-05 TP53: 3.98e-05 RORA1: 3.62e-05 NF-Y: 3.03e-05 SRF: 2.21e-05 ATHB5: 1.89e-05 Evi1: 7.14e-06 PPARG-RXRA: 1.23e-06 NR1H2-RXR: 3.61e-07 CTCGGTGTGAAtccggagAAAGAGAGGGaagtgcagcgccagcTCCACTCCACACCCCCTTCCTGCCTATAAATAACCCCAAgTGTCACTTCAaagaggacggggagcgcggcagaggggctcccgggccggcgggctggggccgccggaCCTGCTCACCACGCCCCCcaccctgggcGAGTTTGCATAAATAAACAAATC T 716 726 + 9.57 ctcggtgtgaa Klf4 734 743 + 6.04 aaagagaggg Bapx1 759 767 - 6.76 tggagtgga RREB1 760 779 + 8.09 ccactccacacccccttcct GABPA 772 781 - 6.44 gcaggaaggg E74A 774 780 - 8.08 caggaag ELK1 774 783 - 6.4 aggcaggaag SPI1 774 779 - 7.05 aggaag c-ETS 774 779 + 6.71 cttcct Broad-complex_1 775 788 - 7.2 tttataggcaggaa TBP 775 789 - 6.88 atttataggcaggaa TBP 777 791 - 7.47 ttatttataggcagg SQUA 778 791 - 6.95 ttatttataggcag TCF1 780 793 - 7.58 ggttatttataggc AGL3 782 791 + 6.39 ctataaataa AGL3 782 791 - 7.33 ttatttatag Broad-complex_4 782 792 + 7.98 ctataaataac CF2-II 782 791 + 7.2 ctataaataa FOXI1 782 793 - 10.1 ggttatttatag MEF2A 782 791 + 9.45 ctataaataa MEF2A 782 791 - 13.4 ttatttatag TBP 782 796 + 10.2 ctataaataacccca Dorsal_1 783 794 - 6.94 gggttatttata FOXL1 783 790 + 8.66 tataaata FOXL1 783 790 - 7.45 tatttata Foxq1 783 793 - 7.65 ggttatttata FOXD1 784 791 + 6.52 ataaataa Macho-1 789 797 - 6.11 ttggggtta Pax2 799 806 + 7.68 tgtcactt Bapx1 800 808 - 6.86 tgaagtgac ESR1 866 883 + 6.36 cctgctcaccacgccccc SP1 873 882 - 7.18 ggggcgtggt cEBP 894 905 - 7.25 ttatgcaaactc NFIL3 895 905 - 6.08 ttatgcaaact TBP 895 909 - 7.3 ttatttatgcaaact HLF 896 907 + 6.85 gtttgcataaat SQUA 896 909 - 8.74 ttatttatgcaaac FOXF2 897 910 + 10.9 tttgcataaataaa FOXL1 897 904 + 7.99 tttgcata HMG-IY 898 913 + 6.72 ttgcataaataaacaa TCF1 899 912 - 7.7 tgtttatttatgca Foxd3 900 911 - 9.1 gtttatttatgc FOXI1 900 911 - 8.05 gtttatttatgc HMG-IY 900 915 + 8.02 gcataaataaacaaat Foxa2 900 911 - 7.3 gtttatttatgc Hunchback 900 909 + 8.13 gcataaataa SQUA 900 913 + 7.51 gcataaataaacaa TBP 900 914 + 8.35 gcataaataaacaaa FOXF2 901 914 + 12.7 cataaataaacaaa FOXL1 901 908 + 6.07 cataaata Foxq1 901 911 - 6.54 gtttatttatg HMG-IY 901 916 + 7.14 cataaataaacaaatc Broad-complex_1 902 915 + 8.92 ataaataaacaaat FOXD1 902 909 + 6.72 ataaataa SQUA 902 915 + 11.3 ataaataaacaaat SRY 902 910 + 7.48 ataaataaa TBP 902 916 + 6.64 ataaataaacaaatc Broad-complex_1 903 916 + 13.2 taaataaacaaatc Broad-complex_3 903 913 + 7.44 taaataaacaa Hunchback 903 912 + 6.22 taaataaaca Broad-complex_2 904 911 - 6.22 gtttattt Broad-complex_4 904 914 + 10.4 aaataaacaaa Foxd3 904 915 - 13.6 atttgtttattt FOXI1 904 915 - 12.9 atttgtttattt Foxa2 904 915 - 11.6 atttgtttattt Hunchback 904 913 + 6.2 aaataaacaa ID1 904 915 - 6.1 atttgtttattt Foxq1 905 915 - 12 atttgtttatt FOXD1 906 913 + 8.63 ataaacaa SRY 906 914 + 9.24 ataaacaaa >NM_080801 (1000 bp) CLUSTER 1 Location: 716 to 916 Score: 9.14 MEF2A: 2.13 T: 1.1 Foxd3: 0.35 RREB1: 0.278 Broad-complex_1: 0.246 Pax2: 0.211 E74A: 0.205 Bapx1: 0.205 FOXI1: 0.197 SP1: 0.196 FOXF2: 0.153 SPI1: 0.103 Foxq1: 0.0943 Klf4: 0.0927 ESR1: 0.075 ZNF42_1-4: 0.0686 Macho-1: 0.0674 ABI4: 0.0668 c-ETS: 0.0592 GABPA: 0.0568 TBP: 0.046 TFAP2A: 0.0457 MNB1A: 0.0446 FOXL1: 0.0424 Foxa2: 0.041 Myf: 0.037 SQUA: 0.0359 ZNF42_5-13: 0.0302 Snail: 0.0289 PBF: 0.0232 Broad-complex_4: 0.0204 Dof2: 0.0174 En1: 0.0171 Arnt-Ahr: 0.0166 RUSH1-alfa: 0.0154 deltaEF1: 0.0145 IRF1: 0.0144 HMG-1: 0.0141 MA0021: 0.0124 MAX: 0.0117 Chop-cEBP: 0.0112 ELK1: 0.0103 ID1: 0.0102 MafB: 0.0101 HNF4: 0.0101 USF1: 0.00961 Spz1: 0.00917 TCF11-MafG: 0.00913 Arnt: 0.00904 ARR10: 0.00872 GATA3: 0.0085 HMG-IY: 0.0085 Pax5: 0.00844 E2F1: 0.00819 SRY: 0.00811 Gata1: 0.00796 NFKB1: 0.00778 Broad-complex_2: 0.00754 Fos: 0.00735 Nkx2-5: 0.00676 Mycn: 0.00657 FOXD1: 0.00644 REL: 0.00625 SPIB: 0.00568 RELA: 0.00542 FOXC1: 0.00531 Dorsal_1: 0.00516 Hunchback: 0.00512 Staf: 0.0051 Pax4: 0.00507 Dorsal_2: 0.00506 TEAD: 0.00453 Myb: 0.00428 AGL3: 0.00409 YY1: 0.00388 HAND1-TCF3: 0.00369 GATA2: 0.00365 cEBP: 0.0035 ELK4: 0.00349 TCF1: 0.00339 NHLH1: 0.00321 Sox5: 0.00321 Broad-complex_3: 0.00306 CFI-USP: 0.00292 RXR-VDR: 0.00216 CF2-II: 0.00213 Ubx: 0.00203 HLF: 0.00184 SOX9: 0.00182 CREB1: 0.00171 PPARG: 0.00164 MYB.ph3: 0.0016 MYC-MAX: 0.00142 Sox17: 0.0014 Gfi: 0.0014 NF-kappaB: 0.00137 GAMYB: 0.00135 NFIL3: 0.0013 Pax6: 0.00126 SU_h: 0.00115 Agamous: 0.00114 RORA: 0.00099 bZIP910: 0.000625 NR2F1: 0.000612 Hox11-CTF1: 0.000545 IRF2: 0.000483 Prrx2: 0.000465 NR3C1: 0.000408 RUNX1: 0.000316 Pbx: 0.00023 Athb-1: 0.000205 bZIP911: 0.000128 Ar: 0.000126 Roaz: 8.88e-05 TAL1-TCF3: 6.25e-05 TP53: 3.98e-05 RORA1: 3.62e-05 NF-Y: 3.03e-05 SRF: 2.21e-05 ATHB5: 1.89e-05 Evi1: 7.14e-06 PPARG-RXRA: 1.23e-06 NR1H2-RXR: 3.61e-07 CTCGGTGTGAAtccggagAAAGAGAGGGaagtgcagcgccagcTCCACTCCACACCCCCTTCCTGCCTATAAATAACCCCAAgTGTCACTTCAaagaggacggggagcgcggcagaggggctcccgggccggcgggctggggccgccggaCCTGCTCACCACGCCCCCcaccctgggcGAGTTTGCATAAATAAACAAATC T 716 726 + 9.57 ctcggtgtgaa Klf4 734 743 + 6.04 aaagagaggg Bapx1 759 767 - 6.76 tggagtgga RREB1 760 779 + 8.09 ccactccacacccccttcct GABPA 772 781 - 6.44 gcaggaaggg E74A 774 780 - 8.08 caggaag ELK1 774 783 - 6.4 aggcaggaag SPI1 774 779 - 7.05 aggaag c-ETS 774 779 + 6.71 cttcct Broad-complex_1 775 788 - 7.2 tttataggcaggaa TBP 775 789 - 6.88 atttataggcaggaa TBP 777 791 - 7.47 ttatttataggcagg SQUA 778 791 - 6.95 ttatttataggcag TCF1 780 793 - 7.58 ggttatttataggc AGL3 782 791 + 6.39 ctataaataa AGL3 782 791 - 7.33 ttatttatag Broad-complex_4 782 792 + 7.98 ctataaataac CF2-II 782 791 + 7.2 ctataaataa FOXI1 782 793 - 10.1 ggttatttatag MEF2A 782 791 + 9.45 ctataaataa MEF2A 782 791 - 13.4 ttatttatag TBP 782 796 + 10.2 ctataaataacccca Dorsal_1 783 794 - 6.94 gggttatttata FOXL1 783 790 + 8.66 tataaata FOXL1 783 790 - 7.45 tatttata Foxq1 783 793 - 7.65 ggttatttata FOXD1 784 791 + 6.52 ataaataa Macho-1 789 797 - 6.11 ttggggtta Pax2 799 806 + 7.68 tgtcactt Bapx1 800 808 - 6.86 tgaagtgac ESR1 866 883 + 6.36 cctgctcaccacgccccc SP1 873 882 - 7.18 ggggcgtggt cEBP 894 905 - 7.25 ttatgcaaactc NFIL3 895 905 - 6.08 ttatgcaaact TBP 895 909 - 7.3 ttatttatgcaaact HLF 896 907 + 6.85 gtttgcataaat SQUA 896 909 - 8.74 ttatttatgcaaac FOXF2 897 910 + 10.9 tttgcataaataaa FOXL1 897 904 + 7.99 tttgcata HMG-IY 898 913 + 6.72 ttgcataaataaacaa TCF1 899 912 - 7.7 tgtttatttatgca Foxd3 900 911 - 9.1 gtttatttatgc FOXI1 900 911 - 8.05 gtttatttatgc HMG-IY 900 915 + 8.02 gcataaataaacaaat Foxa2 900 911 - 7.3 gtttatttatgc Hunchback 900 909 + 8.13 gcataaataa SQUA 900 913 + 7.51 gcataaataaacaa TBP 900 914 + 8.35 gcataaataaacaaa FOXF2 901 914 + 12.7 cataaataaacaaa FOXL1 901 908 + 6.07 cataaata Foxq1 901 911 - 6.54 gtttatttatg HMG-IY 901 916 + 7.14 cataaataaacaaatc Broad-complex_1 902 915 + 8.92 ataaataaacaaat FOXD1 902 909 + 6.72 ataaataa SQUA 902 915 + 11.3 ataaataaacaaat SRY 902 910 + 7.48 ataaataaa TBP 902 916 + 6.64 ataaataaacaaatc Broad-complex_1 903 916 + 13.2 taaataaacaaatc Broad-complex_3 903 913 + 7.44 taaataaacaa Hunchback 903 912 + 6.22 taaataaaca Broad-complex_2 904 911 - 6.22 gtttattt Broad-complex_4 904 914 + 10.4 aaataaacaaa Foxd3 904 915 - 13.6 atttgtttattt FOXI1 904 915 - 12.9 atttgtttattt Foxa2 904 915 - 11.6 atttgtttattt Hunchback 904 913 + 6.2 aaataaacaa ID1 904 915 - 6.1 atttgtttattt Foxq1 905 915 - 12 atttgtttatt FOXD1 906 913 + 8.63 ataaacaa SRY 906 914 + 9.24 ataaacaaa >NM_080802 (1000 bp) CLUSTER 1 Location: 716 to 916 Score: 9.14 MEF2A: 2.13 T: 1.1 Foxd3: 0.35 RREB1: 0.278 Broad-complex_1: 0.246 Pax2: 0.211 E74A: 0.205 Bapx1: 0.205 FOXI1: 0.197 SP1: 0.196 FOXF2: 0.153 SPI1: 0.103 Foxq1: 0.0943 Klf4: 0.0927 ESR1: 0.075 ZNF42_1-4: 0.0686 Macho-1: 0.0674 ABI4: 0.0668 c-ETS: 0.0592 GABPA: 0.0568 TBP: 0.046 TFAP2A: 0.0457 MNB1A: 0.0446 FOXL1: 0.0424 Foxa2: 0.041 Myf: 0.037 SQUA: 0.0359 ZNF42_5-13: 0.0302 Snail: 0.0289 PBF: 0.0232 Broad-complex_4: 0.0204 Dof2: 0.0174 En1: 0.0171 Arnt-Ahr: 0.0166 RUSH1-alfa: 0.0154 deltaEF1: 0.0145 IRF1: 0.0144 HMG-1: 0.0141 MA0021: 0.0124 MAX: 0.0117 Chop-cEBP: 0.0112 ELK1: 0.0103 ID1: 0.0102 MafB: 0.0101 HNF4: 0.0101 USF1: 0.00961 Spz1: 0.00917 TCF11-MafG: 0.00913 Arnt: 0.00904 ARR10: 0.00872 GATA3: 0.0085 HMG-IY: 0.0085 Pax5: 0.00844 E2F1: 0.00819 SRY: 0.00811 Gata1: 0.00796 NFKB1: 0.00778 Broad-complex_2: 0.00754 Fos: 0.00735 Nkx2-5: 0.00676 Mycn: 0.00657 FOXD1: 0.00644 REL: 0.00625 SPIB: 0.00568 RELA: 0.00542 FOXC1: 0.00531 Dorsal_1: 0.00516 Hunchback: 0.00512 Staf: 0.0051 Pax4: 0.00507 Dorsal_2: 0.00506 TEAD: 0.00453 Myb: 0.00428 AGL3: 0.00409 YY1: 0.00388 HAND1-TCF3: 0.00369 GATA2: 0.00365 cEBP: 0.0035 ELK4: 0.00349 TCF1: 0.00339 NHLH1: 0.00321 Sox5: 0.00321 Broad-complex_3: 0.00306 CFI-USP: 0.00292 RXR-VDR: 0.00216 CF2-II: 0.00213 Ubx: 0.00203 HLF: 0.00184 SOX9: 0.00182 CREB1: 0.00171 PPARG: 0.00164 MYB.ph3: 0.0016 MYC-MAX: 0.00142 Sox17: 0.0014 Gfi: 0.0014 NF-kappaB: 0.00137 GAMYB: 0.00135 NFIL3: 0.0013 Pax6: 0.00126 SU_h: 0.00115 Agamous: 0.00114 RORA: 0.00099 bZIP910: 0.000625 NR2F1: 0.000612 Hox11-CTF1: 0.000545 IRF2: 0.000483 Prrx2: 0.000465 NR3C1: 0.000408 RUNX1: 0.000316 Pbx: 0.00023 Athb-1: 0.000205 bZIP911: 0.000128 Ar: 0.000126 Roaz: 8.88e-05 TAL1-TCF3: 6.25e-05 TP53: 3.98e-05 RORA1: 3.62e-05 NF-Y: 3.03e-05 SRF: 2.21e-05 ATHB5: 1.89e-05 Evi1: 7.14e-06 PPARG-RXRA: 1.23e-06 NR1H2-RXR: 3.61e-07 CTCGGTGTGAAtccggagAAAGAGAGGGaagtgcagcgccagcTCCACTCCACACCCCCTTCCTGCCTATAAATAACCCCAAgTGTCACTTCAaagaggacggggagcgcggcagaggggctcccgggccggcgggctggggccgccggaCCTGCTCACCACGCCCCCcaccctgggcGAGTTTGCATAAATAAACAAATC T 716 726 + 9.57 ctcggtgtgaa Klf4 734 743 + 6.04 aaagagaggg Bapx1 759 767 - 6.76 tggagtgga RREB1 760 779 + 8.09 ccactccacacccccttcct GABPA 772 781 - 6.44 gcaggaaggg E74A 774 780 - 8.08 caggaag ELK1 774 783 - 6.4 aggcaggaag SPI1 774 779 - 7.05 aggaag c-ETS 774 779 + 6.71 cttcct Broad-complex_1 775 788 - 7.2 tttataggcaggaa TBP 775 789 - 6.88 atttataggcaggaa TBP 777 791 - 7.47 ttatttataggcagg SQUA 778 791 - 6.95 ttatttataggcag TCF1 780 793 - 7.58 ggttatttataggc AGL3 782 791 + 6.39 ctataaataa AGL3 782 791 - 7.33 ttatttatag Broad-complex_4 782 792 + 7.98 ctataaataac CF2-II 782 791 + 7.2 ctataaataa FOXI1 782 793 - 10.1 ggttatttatag MEF2A 782 791 + 9.45 ctataaataa MEF2A 782 791 - 13.4 ttatttatag TBP 782 796 + 10.2 ctataaataacccca Dorsal_1 783 794 - 6.94 gggttatttata FOXL1 783 790 + 8.66 tataaata FOXL1 783 790 - 7.45 tatttata Foxq1 783 793 - 7.65 ggttatttata FOXD1 784 791 + 6.52 ataaataa Macho-1 789 797 - 6.11 ttggggtta Pax2 799 806 + 7.68 tgtcactt Bapx1 800 808 - 6.86 tgaagtgac ESR1 866 883 + 6.36 cctgctcaccacgccccc SP1 873 882 - 7.18 ggggcgtggt cEBP 894 905 - 7.25 ttatgcaaactc NFIL3 895 905 - 6.08 ttatgcaaact TBP 895 909 - 7.3 ttatttatgcaaact HLF 896 907 + 6.85 gtttgcataaat SQUA 896 909 - 8.74 ttatttatgcaaac FOXF2 897 910 + 10.9 tttgcataaataaa FOXL1 897 904 + 7.99 tttgcata HMG-IY 898 913 + 6.72 ttgcataaataaacaa TCF1 899 912 - 7.7 tgtttatttatgca Foxd3 900 911 - 9.1 gtttatttatgc FOXI1 900 911 - 8.05 gtttatttatgc HMG-IY 900 915 + 8.02 gcataaataaacaaat Foxa2 900 911 - 7.3 gtttatttatgc Hunchback 900 909 + 8.13 gcataaataa SQUA 900 913 + 7.51 gcataaataaacaa TBP 900 914 + 8.35 gcataaataaacaaa FOXF2 901 914 + 12.7 cataaataaacaaa FOXL1 901 908 + 6.07 cataaata Foxq1 901 911 - 6.54 gtttatttatg HMG-IY 901 916 + 7.14 cataaataaacaaatc Broad-complex_1 902 915 + 8.92 ataaataaacaaat FOXD1 902 909 + 6.72 ataaataa SQUA 902 915 + 11.3 ataaataaacaaat SRY 902 910 + 7.48 ataaataaa TBP 902 916 + 6.64 ataaataaacaaatc Broad-complex_1 903 916 + 13.2 taaataaacaaatc Broad-complex_3 903 913 + 7.44 taaataaacaa Hunchback 903 912 + 6.22 taaataaaca Broad-complex_2 904 911 - 6.22 gtttattt Broad-complex_4 904 914 + 10.4 aaataaacaaa Foxd3 904 915 - 13.6 atttgtttattt FOXI1 904 915 - 12.9 atttgtttattt Foxa2 904 915 - 11.6 atttgtttattt Hunchback 904 913 + 6.2 aaataaacaa ID1 904 915 - 6.1 atttgtttattt Foxq1 905 915 - 12 atttgtttatt FOXD1 906 913 + 8.63 ataaacaa SRY 906 914 + 9.24 ataaacaaa >NM_080803 (1000 bp) CLUSTER 1 Location: 716 to 916 Score: 9.14 MEF2A: 2.13 T: 1.1 Foxd3: 0.35 RREB1: 0.278 Broad-complex_1: 0.246 Pax2: 0.211 E74A: 0.205 Bapx1: 0.205 FOXI1: 0.197 SP1: 0.196 FOXF2: 0.153 SPI1: 0.103 Foxq1: 0.0943 Klf4: 0.0927 ESR1: 0.075 ZNF42_1-4: 0.0686 Macho-1: 0.0674 ABI4: 0.0668 c-ETS: 0.0592 GABPA: 0.0568 TBP: 0.046 TFAP2A: 0.0457 MNB1A: 0.0446 FOXL1: 0.0424 Foxa2: 0.041 Myf: 0.037 SQUA: 0.0359 ZNF42_5-13: 0.0302 Snail: 0.0289 PBF: 0.0232 Broad-complex_4: 0.0204 Dof2: 0.0174 En1: 0.0171 Arnt-Ahr: 0.0166 RUSH1-alfa: 0.0154 deltaEF1: 0.0145 IRF1: 0.0144 HMG-1: 0.0141 MA0021: 0.0124 MAX: 0.0117 Chop-cEBP: 0.0112 ELK1: 0.0103 ID1: 0.0102 MafB: 0.0101 HNF4: 0.0101 USF1: 0.00961 Spz1: 0.00917 TCF11-MafG: 0.00913 Arnt: 0.00904 ARR10: 0.00872 GATA3: 0.0085 HMG-IY: 0.0085 Pax5: 0.00844 E2F1: 0.00819 SRY: 0.00811 Gata1: 0.00796 NFKB1: 0.00778 Broad-complex_2: 0.00754 Fos: 0.00735 Nkx2-5: 0.00676 Mycn: 0.00657 FOXD1: 0.00644 REL: 0.00625 SPIB: 0.00568 RELA: 0.00542 FOXC1: 0.00531 Dorsal_1: 0.00516 Hunchback: 0.00512 Staf: 0.0051 Pax4: 0.00507 Dorsal_2: 0.00506 TEAD: 0.00453 Myb: 0.00428 AGL3: 0.00409 YY1: 0.00388 HAND1-TCF3: 0.00369 GATA2: 0.00365 cEBP: 0.0035 ELK4: 0.00349 TCF1: 0.00339 NHLH1: 0.00321 Sox5: 0.00321 Broad-complex_3: 0.00306 CFI-USP: 0.00292 RXR-VDR: 0.00216 CF2-II: 0.00213 Ubx: 0.00203 HLF: 0.00184 SOX9: 0.00182 CREB1: 0.00171 PPARG: 0.00164 MYB.ph3: 0.0016 MYC-MAX: 0.00142 Sox17: 0.0014 Gfi: 0.0014 NF-kappaB: 0.00137 GAMYB: 0.00135 NFIL3: 0.0013 Pax6: 0.00126 SU_h: 0.00115 Agamous: 0.00114 RORA: 0.00099 bZIP910: 0.000625 NR2F1: 0.000612 Hox11-CTF1: 0.000545 IRF2: 0.000483 Prrx2: 0.000465 NR3C1: 0.000408 RUNX1: 0.000316 Pbx: 0.00023 Athb-1: 0.000205 bZIP911: 0.000128 Ar: 0.000126 Roaz: 8.88e-05 TAL1-TCF3: 6.25e-05 TP53: 3.98e-05 RORA1: 3.62e-05 NF-Y: 3.03e-05 SRF: 2.21e-05 ATHB5: 1.89e-05 Evi1: 7.14e-06 PPARG-RXRA: 1.23e-06 NR1H2-RXR: 3.61e-07 CTCGGTGTGAAtccggagAAAGAGAGGGaagtgcagcgccagcTCCACTCCACACCCCCTTCCTGCCTATAAATAACCCCAAgTGTCACTTCAaagaggacggggagcgcggcagaggggctcccgggccggcgggctggggccgccggaCCTGCTCACCACGCCCCCcaccctgggcGAGTTTGCATAAATAAACAAATC T 716 726 + 9.57 ctcggtgtgaa Klf4 734 743 + 6.04 aaagagaggg Bapx1 759 767 - 6.76 tggagtgga RREB1 760 779 + 8.09 ccactccacacccccttcct GABPA 772 781 - 6.44 gcaggaaggg E74A 774 780 - 8.08 caggaag ELK1 774 783 - 6.4 aggcaggaag SPI1 774 779 - 7.05 aggaag c-ETS 774 779 + 6.71 cttcct Broad-complex_1 775 788 - 7.2 tttataggcaggaa TBP 775 789 - 6.88 atttataggcaggaa TBP 777 791 - 7.47 ttatttataggcagg SQUA 778 791 - 6.95 ttatttataggcag TCF1 780 793 - 7.58 ggttatttataggc AGL3 782 791 + 6.39 ctataaataa AGL3 782 791 - 7.33 ttatttatag Broad-complex_4 782 792 + 7.98 ctataaataac CF2-II 782 791 + 7.2 ctataaataa FOXI1 782 793 - 10.1 ggttatttatag MEF2A 782 791 + 9.45 ctataaataa MEF2A 782 791 - 13.4 ttatttatag TBP 782 796 + 10.2 ctataaataacccca Dorsal_1 783 794 - 6.94 gggttatttata FOXL1 783 790 + 8.66 tataaata FOXL1 783 790 - 7.45 tatttata Foxq1 783 793 - 7.65 ggttatttata FOXD1 784 791 + 6.52 ataaataa Macho-1 789 797 - 6.11 ttggggtta Pax2 799 806 + 7.68 tgtcactt Bapx1 800 808 - 6.86 tgaagtgac ESR1 866 883 + 6.36 cctgctcaccacgccccc SP1 873 882 - 7.18 ggggcgtggt cEBP 894 905 - 7.25 ttatgcaaactc NFIL3 895 905 - 6.08 ttatgcaaact TBP 895 909 - 7.3 ttatttatgcaaact HLF 896 907 + 6.85 gtttgcataaat SQUA 896 909 - 8.74 ttatttatgcaaac FOXF2 897 910 + 10.9 tttgcataaataaa FOXL1 897 904 + 7.99 tttgcata HMG-IY 898 913 + 6.72 ttgcataaataaacaa TCF1 899 912 - 7.7 tgtttatttatgca Foxd3 900 911 - 9.1 gtttatttatgc FOXI1 900 911 - 8.05 gtttatttatgc HMG-IY 900 915 + 8.02 gcataaataaacaaat Foxa2 900 911 - 7.3 gtttatttatgc Hunchback 900 909 + 8.13 gcataaataa SQUA 900 913 + 7.51 gcataaataaacaa TBP 900 914 + 8.35 gcataaataaacaaa FOXF2 901 914 + 12.7 cataaataaacaaa FOXL1 901 908 + 6.07 cataaata Foxq1 901 911 - 6.54 gtttatttatg HMG-IY 901 916 + 7.14 cataaataaacaaatc Broad-complex_1 902 915 + 8.92 ataaataaacaaat FOXD1 902 909 + 6.72 ataaataa SQUA 902 915 + 11.3 ataaataaacaaat SRY 902 910 + 7.48 ataaataaa TBP 902 916 + 6.64 ataaataaacaaatc Broad-complex_1 903 916 + 13.2 taaataaacaaatc Broad-complex_3 903 913 + 7.44 taaataaacaa Hunchback 903 912 + 6.22 taaataaaca Broad-complex_2 904 911 - 6.22 gtttattt Broad-complex_4 904 914 + 10.4 aaataaacaaa Foxd3 904 915 - 13.6 atttgtttattt FOXI1 904 915 - 12.9 atttgtttattt Foxa2 904 915 - 11.6 atttgtttattt Hunchback 904 913 + 6.2 aaataaacaa ID1 904 915 - 6.1 atttgtttattt Foxq1 905 915 - 12 atttgtttatt FOXD1 906 913 + 8.63 ataaacaa SRY 906 914 + 9.24 ataaacaaa >NM_080804 (1000 bp) CLUSTER 1 Location: 716 to 916 Score: 9.14 MEF2A: 2.13 T: 1.1 Foxd3: 0.35 RREB1: 0.278 Broad-complex_1: 0.246 Pax2: 0.211 E74A: 0.205 Bapx1: 0.205 FOXI1: 0.197 SP1: 0.196 FOXF2: 0.153 SPI1: 0.103 Foxq1: 0.0943 Klf4: 0.0927 ESR1: 0.075 ZNF42_1-4: 0.0686 Macho-1: 0.0674 ABI4: 0.0668 c-ETS: 0.0592 GABPA: 0.0568 TBP: 0.046 TFAP2A: 0.0457 MNB1A: 0.0446 FOXL1: 0.0424 Foxa2: 0.041 Myf: 0.037 SQUA: 0.0359 ZNF42_5-13: 0.0302 Snail: 0.0289 PBF: 0.0232 Broad-complex_4: 0.0204 Dof2: 0.0174 En1: 0.0171 Arnt-Ahr: 0.0166 RUSH1-alfa: 0.0154 deltaEF1: 0.0145 IRF1: 0.0144 HMG-1: 0.0141 MA0021: 0.0124 MAX: 0.0117 Chop-cEBP: 0.0112 ELK1: 0.0103 ID1: 0.0102 MafB: 0.0101 HNF4: 0.0101 USF1: 0.00961 Spz1: 0.00917 TCF11-MafG: 0.00913 Arnt: 0.00904 ARR10: 0.00872 GATA3: 0.0085 HMG-IY: 0.0085 Pax5: 0.00844 E2F1: 0.00819 SRY: 0.00811 Gata1: 0.00796 NFKB1: 0.00778 Broad-complex_2: 0.00754 Fos: 0.00735 Nkx2-5: 0.00676 Mycn: 0.00657 FOXD1: 0.00644 REL: 0.00625 SPIB: 0.00568 RELA: 0.00542 FOXC1: 0.00531 Dorsal_1: 0.00516 Hunchback: 0.00512 Staf: 0.0051 Pax4: 0.00507 Dorsal_2: 0.00506 TEAD: 0.00453 Myb: 0.00428 AGL3: 0.00409 YY1: 0.00388 HAND1-TCF3: 0.00369 GATA2: 0.00365 cEBP: 0.0035 ELK4: 0.00349 TCF1: 0.00339 NHLH1: 0.00321 Sox5: 0.00321 Broad-complex_3: 0.00306 CFI-USP: 0.00292 RXR-VDR: 0.00216 CF2-II: 0.00213 Ubx: 0.00203 HLF: 0.00184 SOX9: 0.00182 CREB1: 0.00171 PPARG: 0.00164 MYB.ph3: 0.0016 MYC-MAX: 0.00142 Sox17: 0.0014 Gfi: 0.0014 NF-kappaB: 0.00137 GAMYB: 0.00135 NFIL3: 0.0013 Pax6: 0.00126 SU_h: 0.00115 Agamous: 0.00114 RORA: 0.00099 bZIP910: 0.000625 NR2F1: 0.000612 Hox11-CTF1: 0.000545 IRF2: 0.000483 Prrx2: 0.000465 NR3C1: 0.000408 RUNX1: 0.000316 Pbx: 0.00023 Athb-1: 0.000205 bZIP911: 0.000128 Ar: 0.000126 Roaz: 8.88e-05 TAL1-TCF3: 6.25e-05 TP53: 3.98e-05 RORA1: 3.62e-05 NF-Y: 3.03e-05 SRF: 2.21e-05 ATHB5: 1.89e-05 Evi1: 7.14e-06 PPARG-RXRA: 1.23e-06 NR1H2-RXR: 3.61e-07 CTCGGTGTGAAtccggagAAAGAGAGGGaagtgcagcgccagcTCCACTCCACACCCCCTTCCTGCCTATAAATAACCCCAAgTGTCACTTCAaagaggacggggagcgcggcagaggggctcccgggccggcgggctggggccgccggaCCTGCTCACCACGCCCCCcaccctgggcGAGTTTGCATAAATAAACAAATC T 716 726 + 9.57 ctcggtgtgaa Klf4 734 743 + 6.04 aaagagaggg Bapx1 759 767 - 6.76 tggagtgga RREB1 760 779 + 8.09 ccactccacacccccttcct GABPA 772 781 - 6.44 gcaggaaggg E74A 774 780 - 8.08 caggaag ELK1 774 783 - 6.4 aggcaggaag SPI1 774 779 - 7.05 aggaag c-ETS 774 779 + 6.71 cttcct Broad-complex_1 775 788 - 7.2 tttataggcaggaa TBP 775 789 - 6.88 atttataggcaggaa TBP 777 791 - 7.47 ttatttataggcagg SQUA 778 791 - 6.95 ttatttataggcag TCF1 780 793 - 7.58 ggttatttataggc AGL3 782 791 + 6.39 ctataaataa AGL3 782 791 - 7.33 ttatttatag Broad-complex_4 782 792 + 7.98 ctataaataac CF2-II 782 791 + 7.2 ctataaataa FOXI1 782 793 - 10.1 ggttatttatag MEF2A 782 791 + 9.45 ctataaataa MEF2A 782 791 - 13.4 ttatttatag TBP 782 796 + 10.2 ctataaataacccca Dorsal_1 783 794 - 6.94 gggttatttata FOXL1 783 790 + 8.66 tataaata FOXL1 783 790 - 7.45 tatttata Foxq1 783 793 - 7.65 ggttatttata FOXD1 784 791 + 6.52 ataaataa Macho-1 789 797 - 6.11 ttggggtta Pax2 799 806 + 7.68 tgtcactt Bapx1 800 808 - 6.86 tgaagtgac ESR1 866 883 + 6.36 cctgctcaccacgccccc SP1 873 882 - 7.18 ggggcgtggt cEBP 894 905 - 7.25 ttatgcaaactc NFIL3 895 905 - 6.08 ttatgcaaact TBP 895 909 - 7.3 ttatttatgcaaact HLF 896 907 + 6.85 gtttgcataaat SQUA 896 909 - 8.74 ttatttatgcaaac FOXF2 897 910 + 10.9 tttgcataaataaa FOXL1 897 904 + 7.99 tttgcata HMG-IY 898 913 + 6.72 ttgcataaataaacaa TCF1 899 912 - 7.7 tgtttatttatgca Foxd3 900 911 - 9.1 gtttatttatgc FOXI1 900 911 - 8.05 gtttatttatgc HMG-IY 900 915 + 8.02 gcataaataaacaaat Foxa2 900 911 - 7.3 gtttatttatgc Hunchback 900 909 + 8.13 gcataaataa SQUA 900 913 + 7.51 gcataaataaacaa TBP 900 914 + 8.35 gcataaataaacaaa FOXF2 901 914 + 12.7 cataaataaacaaa FOXL1 901 908 + 6.07 cataaata Foxq1 901 911 - 6.54 gtttatttatg HMG-IY 901 916 + 7.14 cataaataaacaaatc Broad-complex_1 902 915 + 8.92 ataaataaacaaat FOXD1 902 909 + 6.72 ataaataa SQUA 902 915 + 11.3 ataaataaacaaat SRY 902 910 + 7.48 ataaataaa TBP 902 916 + 6.64 ataaataaacaaatc Broad-complex_1 903 916 + 13.2 taaataaacaaatc Broad-complex_3 903 913 + 7.44 taaataaacaa Hunchback 903 912 + 6.22 taaataaaca Broad-complex_2 904 911 - 6.22 gtttattt Broad-complex_4 904 914 + 10.4 aaataaacaaa Foxd3 904 915 - 13.6 atttgtttattt FOXI1 904 915 - 12.9 atttgtttattt Foxa2 904 915 - 11.6 atttgtttattt Hunchback 904 913 + 6.2 aaataaacaa ID1 904 915 - 6.1 atttgtttattt Foxq1 905 915 - 12 atttgtttatt FOXD1 906 913 + 8.63 ataaacaa SRY 906 914 + 9.24 ataaacaaa >NM_080805 (1000 bp) CLUSTER 1 Location: 716 to 916 Score: 9.14 MEF2A: 2.13 T: 1.1 Foxd3: 0.35 RREB1: 0.278 Broad-complex_1: 0.246 Pax2: 0.211 E74A: 0.205 Bapx1: 0.205 FOXI1: 0.197 SP1: 0.196 FOXF2: 0.153 SPI1: 0.103 Foxq1: 0.0943 Klf4: 0.0927 ESR1: 0.075 ZNF42_1-4: 0.0686 Macho-1: 0.0674 ABI4: 0.0668 c-ETS: 0.0592 GABPA: 0.0568 TBP: 0.046 TFAP2A: 0.0457 MNB1A: 0.0446 FOXL1: 0.0424 Foxa2: 0.041 Myf: 0.037 SQUA: 0.0359 ZNF42_5-13: 0.0302 Snail: 0.0289 PBF: 0.0232 Broad-complex_4: 0.0204 Dof2: 0.0174 En1: 0.0171 Arnt-Ahr: 0.0166 RUSH1-alfa: 0.0154 deltaEF1: 0.0145 IRF1: 0.0144 HMG-1: 0.0141 MA0021: 0.0124 MAX: 0.0117 Chop-cEBP: 0.0112 ELK1: 0.0103 ID1: 0.0102 MafB: 0.0101 HNF4: 0.0101 USF1: 0.00961 Spz1: 0.00917 TCF11-MafG: 0.00913 Arnt: 0.00904 ARR10: 0.00872 GATA3: 0.0085 HMG-IY: 0.0085 Pax5: 0.00844 E2F1: 0.00819 SRY: 0.00811 Gata1: 0.00796 NFKB1: 0.00778 Broad-complex_2: 0.00754 Fos: 0.00735 Nkx2-5: 0.00676 Mycn: 0.00657 FOXD1: 0.00644 REL: 0.00625 SPIB: 0.00568 RELA: 0.00542 FOXC1: 0.00531 Dorsal_1: 0.00516 Hunchback: 0.00512 Staf: 0.0051 Pax4: 0.00507 Dorsal_2: 0.00506 TEAD: 0.00453 Myb: 0.00428 AGL3: 0.00409 YY1: 0.00388 HAND1-TCF3: 0.00369 GATA2: 0.00365 cEBP: 0.0035 ELK4: 0.00349 TCF1: 0.00339 NHLH1: 0.00321 Sox5: 0.00321 Broad-complex_3: 0.00306 CFI-USP: 0.00292 RXR-VDR: 0.00216 CF2-II: 0.00213 Ubx: 0.00203 HLF: 0.00184 SOX9: 0.00182 CREB1: 0.00171 PPARG: 0.00164 MYB.ph3: 0.0016 MYC-MAX: 0.00142 Sox17: 0.0014 Gfi: 0.0014 NF-kappaB: 0.00137 GAMYB: 0.00135 NFIL3: 0.0013 Pax6: 0.00126 SU_h: 0.00115 Agamous: 0.00114 RORA: 0.00099 bZIP910: 0.000625 NR2F1: 0.000612 Hox11-CTF1: 0.000545 IRF2: 0.000483 Prrx2: 0.000465 NR3C1: 0.000408 RUNX1: 0.000316 Pbx: 0.00023 Athb-1: 0.000205 bZIP911: 0.000128 Ar: 0.000126 Roaz: 8.88e-05 TAL1-TCF3: 6.25e-05 TP53: 3.98e-05 RORA1: 3.62e-05 NF-Y: 3.03e-05 SRF: 2.21e-05 ATHB5: 1.89e-05 Evi1: 7.14e-06 PPARG-RXRA: 1.23e-06 NR1H2-RXR: 3.61e-07 CTCGGTGTGAAtccggagAAAGAGAGGGaagtgcagcgccagcTCCACTCCACACCCCCTTCCTGCCTATAAATAACCCCAAgTGTCACTTCAaagaggacggggagcgcggcagaggggctcccgggccggcgggctggggccgccggaCCTGCTCACCACGCCCCCcaccctgggcGAGTTTGCATAAATAAACAAATC T 716 726 + 9.57 ctcggtgtgaa Klf4 734 743 + 6.04 aaagagaggg Bapx1 759 767 - 6.76 tggagtgga RREB1 760 779 + 8.09 ccactccacacccccttcct GABPA 772 781 - 6.44 gcaggaaggg E74A 774 780 - 8.08 caggaag ELK1 774 783 - 6.4 aggcaggaag SPI1 774 779 - 7.05 aggaag c-ETS 774 779 + 6.71 cttcct Broad-complex_1 775 788 - 7.2 tttataggcaggaa TBP 775 789 - 6.88 atttataggcaggaa TBP 777 791 - 7.47 ttatttataggcagg SQUA 778 791 - 6.95 ttatttataggcag TCF1 780 793 - 7.58 ggttatttataggc AGL3 782 791 + 6.39 ctataaataa AGL3 782 791 - 7.33 ttatttatag Broad-complex_4 782 792 + 7.98 ctataaataac CF2-II 782 791 + 7.2 ctataaataa FOXI1 782 793 - 10.1 ggttatttatag MEF2A 782 791 + 9.45 ctataaataa MEF2A 782 791 - 13.4 ttatttatag TBP 782 796 + 10.2 ctataaataacccca Dorsal_1 783 794 - 6.94 gggttatttata FOXL1 783 790 + 8.66 tataaata FOXL1 783 790 - 7.45 tatttata Foxq1 783 793 - 7.65 ggttatttata FOXD1 784 791 + 6.52 ataaataa Macho-1 789 797 - 6.11 ttggggtta Pax2 799 806 + 7.68 tgtcactt Bapx1 800 808 - 6.86 tgaagtgac ESR1 866 883 + 6.36 cctgctcaccacgccccc SP1 873 882 - 7.18 ggggcgtggt cEBP 894 905 - 7.25 ttatgcaaactc NFIL3 895 905 - 6.08 ttatgcaaact TBP 895 909 - 7.3 ttatttatgcaaact HLF 896 907 + 6.85 gtttgcataaat SQUA 896 909 - 8.74 ttatttatgcaaac FOXF2 897 910 + 10.9 tttgcataaataaa FOXL1 897 904 + 7.99 tttgcata HMG-IY 898 913 + 6.72 ttgcataaataaacaa TCF1 899 912 - 7.7 tgtttatttatgca Foxd3 900 911 - 9.1 gtttatttatgc FOXI1 900 911 - 8.05 gtttatttatgc HMG-IY 900 915 + 8.02 gcataaataaacaaat Foxa2 900 911 - 7.3 gtttatttatgc Hunchback 900 909 + 8.13 gcataaataa SQUA 900 913 + 7.51 gcataaataaacaa TBP 900 914 + 8.35 gcataaataaacaaa FOXF2 901 914 + 12.7 cataaataaacaaa FOXL1 901 908 + 6.07 cataaata Foxq1 901 911 - 6.54 gtttatttatg HMG-IY 901 916 + 7.14 cataaataaacaaatc Broad-complex_1 902 915 + 8.92 ataaataaacaaat FOXD1 902 909 + 6.72 ataaataa SQUA 902 915 + 11.3 ataaataaacaaat SRY 902 910 + 7.48 ataaataaa TBP 902 916 + 6.64 ataaataaacaaatc Broad-complex_1 903 916 + 13.2 taaataaacaaatc Broad-complex_3 903 913 + 7.44 taaataaacaa Hunchback 903 912 + 6.22 taaataaaca Broad-complex_2 904 911 - 6.22 gtttattt Broad-complex_4 904 914 + 10.4 aaataaacaaa Foxd3 904 915 - 13.6 atttgtttattt FOXI1 904 915 - 12.9 atttgtttattt Foxa2 904 915 - 11.6 atttgtttattt Hunchback 904 913 + 6.2 aaataaacaa ID1 904 915 - 6.1 atttgtttattt Foxq1 905 915 - 12 atttgtttatt FOXD1 906 913 + 8.63 ataaacaa SRY 906 914 + 9.24 ataaacaaa >NM_080806 (1000 bp) CLUSTER 1 Location: 716 to 916 Score: 9.14 MEF2A: 2.13 T: 1.1 Foxd3: 0.35 RREB1: 0.278 Broad-complex_1: 0.246 Pax2: 0.211 E74A: 0.205 Bapx1: 0.205 FOXI1: 0.197 SP1: 0.196 FOXF2: 0.153 SPI1: 0.103 Foxq1: 0.0943 Klf4: 0.0927 ESR1: 0.075 ZNF42_1-4: 0.0686 Macho-1: 0.0674 ABI4: 0.0668 c-ETS: 0.0592 GABPA: 0.0568 TBP: 0.046 TFAP2A: 0.0457 MNB1A: 0.0446 FOXL1: 0.0424 Foxa2: 0.041 Myf: 0.037 SQUA: 0.0359 ZNF42_5-13: 0.0302 Snail: 0.0289 PBF: 0.0232 Broad-complex_4: 0.0204 Dof2: 0.0174 En1: 0.0171 Arnt-Ahr: 0.0166 RUSH1-alfa: 0.0154 deltaEF1: 0.0145 IRF1: 0.0144 HMG-1: 0.0141 MA0021: 0.0124 MAX: 0.0117 Chop-cEBP: 0.0112 ELK1: 0.0103 ID1: 0.0102 MafB: 0.0101 HNF4: 0.0101 USF1: 0.00961 Spz1: 0.00917 TCF11-MafG: 0.00913 Arnt: 0.00904 ARR10: 0.00872 GATA3: 0.0085 HMG-IY: 0.0085 Pax5: 0.00844 E2F1: 0.00819 SRY: 0.00811 Gata1: 0.00796 NFKB1: 0.00778 Broad-complex_2: 0.00754 Fos: 0.00735 Nkx2-5: 0.00676 Mycn: 0.00657 FOXD1: 0.00644 REL: 0.00625 SPIB: 0.00568 RELA: 0.00542 FOXC1: 0.00531 Dorsal_1: 0.00516 Hunchback: 0.00512 Staf: 0.0051 Pax4: 0.00507 Dorsal_2: 0.00506 TEAD: 0.00453 Myb: 0.00428 AGL3: 0.00409 YY1: 0.00388 HAND1-TCF3: 0.00369 GATA2: 0.00365 cEBP: 0.0035 ELK4: 0.00349 TCF1: 0.00339 NHLH1: 0.00321 Sox5: 0.00321 Broad-complex_3: 0.00306 CFI-USP: 0.00292 RXR-VDR: 0.00216 CF2-II: 0.00213 Ubx: 0.00203 HLF: 0.00184 SOX9: 0.00182 CREB1: 0.00171 PPARG: 0.00164 MYB.ph3: 0.0016 MYC-MAX: 0.00142 Sox17: 0.0014 Gfi: 0.0014 NF-kappaB: 0.00137 GAMYB: 0.00135 NFIL3: 0.0013 Pax6: 0.00126 SU_h: 0.00115 Agamous: 0.00114 RORA: 0.00099 bZIP910: 0.000625 NR2F1: 0.000612 Hox11-CTF1: 0.000545 IRF2: 0.000483 Prrx2: 0.000465 NR3C1: 0.000408 RUNX1: 0.000316 Pbx: 0.00023 Athb-1: 0.000205 bZIP911: 0.000128 Ar: 0.000126 Roaz: 8.88e-05 TAL1-TCF3: 6.25e-05 TP53: 3.98e-05 RORA1: 3.62e-05 NF-Y: 3.03e-05 SRF: 2.21e-05 ATHB5: 1.89e-05 Evi1: 7.14e-06 PPARG-RXRA: 1.23e-06 NR1H2-RXR: 3.61e-07 CTCGGTGTGAAtccggagAAAGAGAGGGaagtgcagcgccagcTCCACTCCACACCCCCTTCCTGCCTATAAATAACCCCAAgTGTCACTTCAaagaggacggggagcgcggcagaggggctcccgggccggcgggctggggccgccggaCCTGCTCACCACGCCCCCcaccctgggcGAGTTTGCATAAATAAACAAATC T 716 726 + 9.57 ctcggtgtgaa Klf4 734 743 + 6.04 aaagagaggg Bapx1 759 767 - 6.76 tggagtgga RREB1 760 779 + 8.09 ccactccacacccccttcct GABPA 772 781 - 6.44 gcaggaaggg E74A 774 780 - 8.08 caggaag ELK1 774 783 - 6.4 aggcaggaag SPI1 774 779 - 7.05 aggaag c-ETS 774 779 + 6.71 cttcct Broad-complex_1 775 788 - 7.2 tttataggcaggaa TBP 775 789 - 6.88 atttataggcaggaa TBP 777 791 - 7.47 ttatttataggcagg SQUA 778 791 - 6.95 ttatttataggcag TCF1 780 793 - 7.58 ggttatttataggc AGL3 782 791 + 6.39 ctataaataa AGL3 782 791 - 7.33 ttatttatag Broad-complex_4 782 792 + 7.98 ctataaataac CF2-II 782 791 + 7.2 ctataaataa FOXI1 782 793 - 10.1 ggttatttatag MEF2A 782 791 + 9.45 ctataaataa MEF2A 782 791 - 13.4 ttatttatag TBP 782 796 + 10.2 ctataaataacccca Dorsal_1 783 794 - 6.94 gggttatttata FOXL1 783 790 + 8.66 tataaata FOXL1 783 790 - 7.45 tatttata Foxq1 783 793 - 7.65 ggttatttata FOXD1 784 791 + 6.52 ataaataa Macho-1 789 797 - 6.11 ttggggtta Pax2 799 806 + 7.68 tgtcactt Bapx1 800 808 - 6.86 tgaagtgac ESR1 866 883 + 6.36 cctgctcaccacgccccc SP1 873 882 - 7.18 ggggcgtggt cEBP 894 905 - 7.25 ttatgcaaactc NFIL3 895 905 - 6.08 ttatgcaaact TBP 895 909 - 7.3 ttatttatgcaaact HLF 896 907 + 6.85 gtttgcataaat SQUA 896 909 - 8.74 ttatttatgcaaac FOXF2 897 910 + 10.9 tttgcataaataaa FOXL1 897 904 + 7.99 tttgcata HMG-IY 898 913 + 6.72 ttgcataaataaacaa TCF1 899 912 - 7.7 tgtttatttatgca Foxd3 900 911 - 9.1 gtttatttatgc FOXI1 900 911 - 8.05 gtttatttatgc HMG-IY 900 915 + 8.02 gcataaataaacaaat Foxa2 900 911 - 7.3 gtttatttatgc Hunchback 900 909 + 8.13 gcataaataa SQUA 900 913 + 7.51 gcataaataaacaa TBP 900 914 + 8.35 gcataaataaacaaa FOXF2 901 914 + 12.7 cataaataaacaaa FOXL1 901 908 + 6.07 cataaata Foxq1 901 911 - 6.54 gtttatttatg HMG-IY 901 916 + 7.14 cataaataaacaaatc Broad-complex_1 902 915 + 8.92 ataaataaacaaat FOXD1 902 909 + 6.72 ataaataa SQUA 902 915 + 11.3 ataaataaacaaat SRY 902 910 + 7.48 ataaataaa TBP 902 916 + 6.64 ataaataaacaaatc Broad-complex_1 903 916 + 13.2 taaataaacaaatc Broad-complex_3 903 913 + 7.44 taaataaacaa Hunchback 903 912 + 6.22 taaataaaca Broad-complex_2 904 911 - 6.22 gtttattt Broad-complex_4 904 914 + 10.4 aaataaacaaa Foxd3 904 915 - 13.6 atttgtttattt FOXI1 904 915 - 12.9 atttgtttattt Foxa2 904 915 - 11.6 atttgtttattt Hunchback 904 913 + 6.2 aaataaacaa ID1 904 915 - 6.1 atttgtttattt Foxq1 905 915 - 12 atttgtttatt FOXD1 906 913 + 8.63 ataaacaa SRY 906 914 + 9.24 ataaacaaa >NM_080807 (1000 bp) CLUSTER 1 Location: 716 to 916 Score: 9.14 MEF2A: 2.13 T: 1.1 Foxd3: 0.35 RREB1: 0.278 Broad-complex_1: 0.246 Pax2: 0.211 E74A: 0.205 Bapx1: 0.205 FOXI1: 0.197 SP1: 0.196 FOXF2: 0.153 SPI1: 0.103 Foxq1: 0.0943 Klf4: 0.0927 ESR1: 0.075 ZNF42_1-4: 0.0686 Macho-1: 0.0674 ABI4: 0.0668 c-ETS: 0.0592 GABPA: 0.0568 TBP: 0.046 TFAP2A: 0.0457 MNB1A: 0.0446 FOXL1: 0.0424 Foxa2: 0.041 Myf: 0.037 SQUA: 0.0359 ZNF42_5-13: 0.0302 Snail: 0.0289 PBF: 0.0232 Broad-complex_4: 0.0204 Dof2: 0.0174 En1: 0.0171 Arnt-Ahr: 0.0166 RUSH1-alfa: 0.0154 deltaEF1: 0.0145 IRF1: 0.0144 HMG-1: 0.0141 MA0021: 0.0124 MAX: 0.0117 Chop-cEBP: 0.0112 ELK1: 0.0103 ID1: 0.0102 MafB: 0.0101 HNF4: 0.0101 USF1: 0.00961 Spz1: 0.00917 TCF11-MafG: 0.00913 Arnt: 0.00904 ARR10: 0.00872 GATA3: 0.0085 HMG-IY: 0.0085 Pax5: 0.00844 E2F1: 0.00819 SRY: 0.00811 Gata1: 0.00796 NFKB1: 0.00778 Broad-complex_2: 0.00754 Fos: 0.00735 Nkx2-5: 0.00676 Mycn: 0.00657 FOXD1: 0.00644 REL: 0.00625 SPIB: 0.00568 RELA: 0.00542 FOXC1: 0.00531 Dorsal_1: 0.00516 Hunchback: 0.00512 Staf: 0.0051 Pax4: 0.00507 Dorsal_2: 0.00506 TEAD: 0.00453 Myb: 0.00428 AGL3: 0.00409 YY1: 0.00388 HAND1-TCF3: 0.00369 GATA2: 0.00365 cEBP: 0.0035 ELK4: 0.00349 TCF1: 0.00339 NHLH1: 0.00321 Sox5: 0.00321 Broad-complex_3: 0.00306 CFI-USP: 0.00292 RXR-VDR: 0.00216 CF2-II: 0.00213 Ubx: 0.00203 HLF: 0.00184 SOX9: 0.00182 CREB1: 0.00171 PPARG: 0.00164 MYB.ph3: 0.0016 MYC-MAX: 0.00142 Sox17: 0.0014 Gfi: 0.0014 NF-kappaB: 0.00137 GAMYB: 0.00135 NFIL3: 0.0013 Pax6: 0.00126 SU_h: 0.00115 Agamous: 0.00114 RORA: 0.00099 bZIP910: 0.000625 NR2F1: 0.000612 Hox11-CTF1: 0.000545 IRF2: 0.000483 Prrx2: 0.000465 NR3C1: 0.000408 RUNX1: 0.000316 Pbx: 0.00023 Athb-1: 0.000205 bZIP911: 0.000128 Ar: 0.000126 Roaz: 8.88e-05 TAL1-TCF3: 6.25e-05 TP53: 3.98e-05 RORA1: 3.62e-05 NF-Y: 3.03e-05 SRF: 2.21e-05 ATHB5: 1.89e-05 Evi1: 7.14e-06 PPARG-RXRA: 1.23e-06 NR1H2-RXR: 3.61e-07 CTCGGTGTGAAtccggagAAAGAGAGGGaagtgcagcgccagcTCCACTCCACACCCCCTTCCTGCCTATAAATAACCCCAAgTGTCACTTCAaagaggacggggagcgcggcagaggggctcccgggccggcgggctggggccgccggaCCTGCTCACCACGCCCCCcaccctgggcGAGTTTGCATAAATAAACAAATC T 716 726 + 9.57 ctcggtgtgaa Klf4 734 743 + 6.04 aaagagaggg Bapx1 759 767 - 6.76 tggagtgga RREB1 760 779 + 8.09 ccactccacacccccttcct GABPA 772 781 - 6.44 gcaggaaggg E74A 774 780 - 8.08 caggaag ELK1 774 783 - 6.4 aggcaggaag SPI1 774 779 - 7.05 aggaag c-ETS 774 779 + 6.71 cttcct Broad-complex_1 775 788 - 7.2 tttataggcaggaa TBP 775 789 - 6.88 atttataggcaggaa TBP 777 791 - 7.47 ttatttataggcagg SQUA 778 791 - 6.95 ttatttataggcag TCF1 780 793 - 7.58 ggttatttataggc AGL3 782 791 + 6.39 ctataaataa AGL3 782 791 - 7.33 ttatttatag Broad-complex_4 782 792 + 7.98 ctataaataac CF2-II 782 791 + 7.2 ctataaataa FOXI1 782 793 - 10.1 ggttatttatag MEF2A 782 791 + 9.45 ctataaataa MEF2A 782 791 - 13.4 ttatttatag TBP 782 796 + 10.2 ctataaataacccca Dorsal_1 783 794 - 6.94 gggttatttata FOXL1 783 790 + 8.66 tataaata FOXL1 783 790 - 7.45 tatttata Foxq1 783 793 - 7.65 ggttatttata FOXD1 784 791 + 6.52 ataaataa Macho-1 789 797 - 6.11 ttggggtta Pax2 799 806 + 7.68 tgtcactt Bapx1 800 808 - 6.86 tgaagtgac ESR1 866 883 + 6.36 cctgctcaccacgccccc SP1 873 882 - 7.18 ggggcgtggt cEBP 894 905 - 7.25 ttatgcaaactc NFIL3 895 905 - 6.08 ttatgcaaact TBP 895 909 - 7.3 ttatttatgcaaact HLF 896 907 + 6.85 gtttgcataaat SQUA 896 909 - 8.74 ttatttatgcaaac FOXF2 897 910 + 10.9 tttgcataaataaa FOXL1 897 904 + 7.99 tttgcata HMG-IY 898 913 + 6.72 ttgcataaataaacaa TCF1 899 912 - 7.7 tgtttatttatgca Foxd3 900 911 - 9.1 gtttatttatgc FOXI1 900 911 - 8.05 gtttatttatgc HMG-IY 900 915 + 8.02 gcataaataaacaaat Foxa2 900 911 - 7.3 gtttatttatgc Hunchback 900 909 + 8.13 gcataaataa SQUA 900 913 + 7.51 gcataaataaacaa TBP 900 914 + 8.35 gcataaataaacaaa FOXF2 901 914 + 12.7 cataaataaacaaa FOXL1 901 908 + 6.07 cataaata Foxq1 901 911 - 6.54 gtttatttatg HMG-IY 901 916 + 7.14 cataaataaacaaatc Broad-complex_1 902 915 + 8.92 ataaataaacaaat FOXD1 902 909 + 6.72 ataaataa SQUA 902 915 + 11.3 ataaataaacaaat SRY 902 910 + 7.48 ataaataaa TBP 902 916 + 6.64 ataaataaacaaatc Broad-complex_1 903 916 + 13.2 taaataaacaaatc Broad-complex_3 903 913 + 7.44 taaataaacaa Hunchback 903 912 + 6.22 taaataaaca Broad-complex_2 904 911 - 6.22 gtttattt Broad-complex_4 904 914 + 10.4 aaataaacaaa Foxd3 904 915 - 13.6 atttgtttattt FOXI1 904 915 - 12.9 atttgtttattt Foxa2 904 915 - 11.6 atttgtttattt Hunchback 904 913 + 6.2 aaataaacaa ID1 904 915 - 6.1 atttgtttattt Foxq1 905 915 - 12 atttgtttatt FOXD1 906 913 + 8.63 ataaacaa SRY 906 914 + 9.24 ataaacaaa >NM_080808 (1000 bp) CLUSTER 1 Location: 716 to 916 Score: 9.14 MEF2A: 2.13 T: 1.1 Foxd3: 0.35 RREB1: 0.278 Broad-complex_1: 0.246 Pax2: 0.211 E74A: 0.205 Bapx1: 0.205 FOXI1: 0.197 SP1: 0.196 FOXF2: 0.153 SPI1: 0.103 Foxq1: 0.0943 Klf4: 0.0927 ESR1: 0.075 ZNF42_1-4: 0.0686 Macho-1: 0.0674 ABI4: 0.0668 c-ETS: 0.0592 GABPA: 0.0568 TBP: 0.046 TFAP2A: 0.0457 MNB1A: 0.0446 FOXL1: 0.0424 Foxa2: 0.041 Myf: 0.037 SQUA: 0.0359 ZNF42_5-13: 0.0302 Snail: 0.0289 PBF: 0.0232 Broad-complex_4: 0.0204 Dof2: 0.0174 En1: 0.0171 Arnt-Ahr: 0.0166 RUSH1-alfa: 0.0154 deltaEF1: 0.0145 IRF1: 0.0144 HMG-1: 0.0141 MA0021: 0.0124 MAX: 0.0117 Chop-cEBP: 0.0112 ELK1: 0.0103 ID1: 0.0102 MafB: 0.0101 HNF4: 0.0101 USF1: 0.00961 Spz1: 0.00917 TCF11-MafG: 0.00913 Arnt: 0.00904 ARR10: 0.00872 GATA3: 0.0085 HMG-IY: 0.0085 Pax5: 0.00844 E2F1: 0.00819 SRY: 0.00811 Gata1: 0.00796 NFKB1: 0.00778 Broad-complex_2: 0.00754 Fos: 0.00735 Nkx2-5: 0.00676 Mycn: 0.00657 FOXD1: 0.00644 REL: 0.00625 SPIB: 0.00568 RELA: 0.00542 FOXC1: 0.00531 Dorsal_1: 0.00516 Hunchback: 0.00512 Staf: 0.0051 Pax4: 0.00507 Dorsal_2: 0.00506 TEAD: 0.00453 Myb: 0.00428 AGL3: 0.00409 YY1: 0.00388 HAND1-TCF3: 0.00369 GATA2: 0.00365 cEBP: 0.0035 ELK4: 0.00349 TCF1: 0.00339 NHLH1: 0.00321 Sox5: 0.00321 Broad-complex_3: 0.00306 CFI-USP: 0.00292 RXR-VDR: 0.00216 CF2-II: 0.00213 Ubx: 0.00203 HLF: 0.00184 SOX9: 0.00182 CREB1: 0.00171 PPARG: 0.00164 MYB.ph3: 0.0016 MYC-MAX: 0.00142 Sox17: 0.0014 Gfi: 0.0014 NF-kappaB: 0.00137 GAMYB: 0.00135 NFIL3: 0.0013 Pax6: 0.00126 SU_h: 0.00115 Agamous: 0.00114 RORA: 0.00099 bZIP910: 0.000625 NR2F1: 0.000612 Hox11-CTF1: 0.000545 IRF2: 0.000483 Prrx2: 0.000465 NR3C1: 0.000408 RUNX1: 0.000316 Pbx: 0.00023 Athb-1: 0.000205 bZIP911: 0.000128 Ar: 0.000126 Roaz: 8.88e-05 TAL1-TCF3: 6.25e-05 TP53: 3.98e-05 RORA1: 3.62e-05 NF-Y: 3.03e-05 SRF: 2.21e-05 ATHB5: 1.89e-05 Evi1: 7.14e-06 PPARG-RXRA: 1.23e-06 NR1H2-RXR: 3.61e-07 CTCGGTGTGAAtccggagAAAGAGAGGGaagtgcagcgccagcTCCACTCCACACCCCCTTCCTGCCTATAAATAACCCCAAgTGTCACTTCAaagaggacggggagcgcggcagaggggctcccgggccggcgggctggggccgccggaCCTGCTCACCACGCCCCCcaccctgggcGAGTTTGCATAAATAAACAAATC T 716 726 + 9.57 ctcggtgtgaa Klf4 734 743 + 6.04 aaagagaggg Bapx1 759 767 - 6.76 tggagtgga RREB1 760 779 + 8.09 ccactccacacccccttcct GABPA 772 781 - 6.44 gcaggaaggg E74A 774 780 - 8.08 caggaag ELK1 774 783 - 6.4 aggcaggaag SPI1 774 779 - 7.05 aggaag c-ETS 774 779 + 6.71 cttcct Broad-complex_1 775 788 - 7.2 tttataggcaggaa TBP 775 789 - 6.88 atttataggcaggaa TBP 777 791 - 7.47 ttatttataggcagg SQUA 778 791 - 6.95 ttatttataggcag TCF1 780 793 - 7.58 ggttatttataggc AGL3 782 791 + 6.39 ctataaataa AGL3 782 791 - 7.33 ttatttatag Broad-complex_4 782 792 + 7.98 ctataaataac CF2-II 782 791 + 7.2 ctataaataa FOXI1 782 793 - 10.1 ggttatttatag MEF2A 782 791 + 9.45 ctataaataa MEF2A 782 791 - 13.4 ttatttatag TBP 782 796 + 10.2 ctataaataacccca Dorsal_1 783 794 - 6.94 gggttatttata FOXL1 783 790 + 8.66 tataaata FOXL1 783 790 - 7.45 tatttata Foxq1 783 793 - 7.65 ggttatttata FOXD1 784 791 + 6.52 ataaataa Macho-1 789 797 - 6.11 ttggggtta Pax2 799 806 + 7.68 tgtcactt Bapx1 800 808 - 6.86 tgaagtgac ESR1 866 883 + 6.36 cctgctcaccacgccccc SP1 873 882 - 7.18 ggggcgtggt cEBP 894 905 - 7.25 ttatgcaaactc NFIL3 895 905 - 6.08 ttatgcaaact TBP 895 909 - 7.3 ttatttatgcaaact HLF 896 907 + 6.85 gtttgcataaat SQUA 896 909 - 8.74 ttatttatgcaaac FOXF2 897 910 + 10.9 tttgcataaataaa FOXL1 897 904 + 7.99 tttgcata HMG-IY 898 913 + 6.72 ttgcataaataaacaa TCF1 899 912 - 7.7 tgtttatttatgca Foxd3 900 911 - 9.1 gtttatttatgc FOXI1 900 911 - 8.05 gtttatttatgc HMG-IY 900 915 + 8.02 gcataaataaacaaat Foxa2 900 911 - 7.3 gtttatttatgc Hunchback 900 909 + 8.13 gcataaataa SQUA 900 913 + 7.51 gcataaataaacaa TBP 900 914 + 8.35 gcataaataaacaaa FOXF2 901 914 + 12.7 cataaataaacaaa FOXL1 901 908 + 6.07 cataaata Foxq1 901 911 - 6.54 gtttatttatg HMG-IY 901 916 + 7.14 cataaataaacaaatc Broad-complex_1 902 915 + 8.92 ataaataaacaaat FOXD1 902 909 + 6.72 ataaataa SQUA 902 915 + 11.3 ataaataaacaaat SRY 902 910 + 7.48 ataaataaa TBP 902 916 + 6.64 ataaataaacaaatc Broad-complex_1 903 916 + 13.2 taaataaacaaatc Broad-complex_3 903 913 + 7.44 taaataaacaa Hunchback 903 912 + 6.22 taaataaaca Broad-complex_2 904 911 - 6.22 gtttattt Broad-complex_4 904 914 + 10.4 aaataaacaaa Foxd3 904 915 - 13.6 atttgtttattt FOXI1 904 915 - 12.9 atttgtttattt Foxa2 904 915 - 11.6 atttgtttattt Hunchback 904 913 + 6.2 aaataaacaa ID1 904 915 - 6.1 atttgtttattt Foxq1 905 915 - 12 atttgtttatt FOXD1 906 913 + 8.63 ataaacaa SRY 906 914 + 9.24 ataaacaaa >NM_080809 (1000 bp) CLUSTER 1 Location: 716 to 916 Score: 9.14 MEF2A: 2.13 T: 1.1 Foxd3: 0.35 RREB1: 0.278 Broad-complex_1: 0.246 Pax2: 0.211 E74A: 0.205 Bapx1: 0.205 FOXI1: 0.197 SP1: 0.196 FOXF2: 0.153 SPI1: 0.103 Foxq1: 0.0943 Klf4: 0.0927 ESR1: 0.075 ZNF42_1-4: 0.0686 Macho-1: 0.0674 ABI4: 0.0668 c-ETS: 0.0592 GABPA: 0.0568 TBP: 0.046 TFAP2A: 0.0457 MNB1A: 0.0446 FOXL1: 0.0424 Foxa2: 0.041 Myf: 0.037 SQUA: 0.0359 ZNF42_5-13: 0.0302 Snail: 0.0289 PBF: 0.0232 Broad-complex_4: 0.0204 Dof2: 0.0174 En1: 0.0171 Arnt-Ahr: 0.0166 RUSH1-alfa: 0.0154 deltaEF1: 0.0145 IRF1: 0.0144 HMG-1: 0.0141 MA0021: 0.0124 MAX: 0.0117 Chop-cEBP: 0.0112 ELK1: 0.0103 ID1: 0.0102 MafB: 0.0101 HNF4: 0.0101 USF1: 0.00961 Spz1: 0.00917 TCF11-MafG: 0.00913 Arnt: 0.00904 ARR10: 0.00872 GATA3: 0.0085 HMG-IY: 0.0085 Pax5: 0.00844 E2F1: 0.00819 SRY: 0.00811 Gata1: 0.00796 NFKB1: 0.00778 Broad-complex_2: 0.00754 Fos: 0.00735 Nkx2-5: 0.00676 Mycn: 0.00657 FOXD1: 0.00644 REL: 0.00625 SPIB: 0.00568 RELA: 0.00542 FOXC1: 0.00531 Dorsal_1: 0.00516 Hunchback: 0.00512 Staf: 0.0051 Pax4: 0.00507 Dorsal_2: 0.00506 TEAD: 0.00453 Myb: 0.00428 AGL3: 0.00409 YY1: 0.00388 HAND1-TCF3: 0.00369 GATA2: 0.00365 cEBP: 0.0035 ELK4: 0.00349 TCF1: 0.00339 NHLH1: 0.00321 Sox5: 0.00321 Broad-complex_3: 0.00306 CFI-USP: 0.00292 RXR-VDR: 0.00216 CF2-II: 0.00213 Ubx: 0.00203 HLF: 0.00184 SOX9: 0.00182 CREB1: 0.00171 PPARG: 0.00164 MYB.ph3: 0.0016 MYC-MAX: 0.00142 Sox17: 0.0014 Gfi: 0.0014 NF-kappaB: 0.00137 GAMYB: 0.00135 NFIL3: 0.0013 Pax6: 0.00126 SU_h: 0.00115 Agamous: 0.00114 RORA: 0.00099 bZIP910: 0.000625 NR2F1: 0.000612 Hox11-CTF1: 0.000545 IRF2: 0.000483 Prrx2: 0.000465 NR3C1: 0.000408 RUNX1: 0.000316 Pbx: 0.00023 Athb-1: 0.000205 bZIP911: 0.000128 Ar: 0.000126 Roaz: 8.88e-05 TAL1-TCF3: 6.25e-05 TP53: 3.98e-05 RORA1: 3.62e-05 NF-Y: 3.03e-05 SRF: 2.21e-05 ATHB5: 1.89e-05 Evi1: 7.14e-06 PPARG-RXRA: 1.23e-06 NR1H2-RXR: 3.61e-07 CTCGGTGTGAAtccggagAAAGAGAGGGaagtgcagcgccagcTCCACTCCACACCCCCTTCCTGCCTATAAATAACCCCAAgTGTCACTTCAaagaggacggggagcgcggcagaggggctcccgggccggcgggctggggccgccggaCCTGCTCACCACGCCCCCcaccctgggcGAGTTTGCATAAATAAACAAATC T 716 726 + 9.57 ctcggtgtgaa Klf4 734 743 + 6.04 aaagagaggg Bapx1 759 767 - 6.76 tggagtgga RREB1 760 779 + 8.09 ccactccacacccccttcct GABPA 772 781 - 6.44 gcaggaaggg E74A 774 780 - 8.08 caggaag ELK1 774 783 - 6.4 aggcaggaag SPI1 774 779 - 7.05 aggaag c-ETS 774 779 + 6.71 cttcct Broad-complex_1 775 788 - 7.2 tttataggcaggaa TBP 775 789 - 6.88 atttataggcaggaa TBP 777 791 - 7.47 ttatttataggcagg SQUA 778 791 - 6.95 ttatttataggcag TCF1 780 793 - 7.58 ggttatttataggc AGL3 782 791 + 6.39 ctataaataa AGL3 782 791 - 7.33 ttatttatag Broad-complex_4 782 792 + 7.98 ctataaataac CF2-II 782 791 + 7.2 ctataaataa FOXI1 782 793 - 10.1 ggttatttatag MEF2A 782 791 + 9.45 ctataaataa MEF2A 782 791 - 13.4 ttatttatag TBP 782 796 + 10.2 ctataaataacccca Dorsal_1 783 794 - 6.94 gggttatttata FOXL1 783 790 + 8.66 tataaata FOXL1 783 790 - 7.45 tatttata Foxq1 783 793 - 7.65 ggttatttata FOXD1 784 791 + 6.52 ataaataa Macho-1 789 797 - 6.11 ttggggtta Pax2 799 806 + 7.68 tgtcactt Bapx1 800 808 - 6.86 tgaagtgac ESR1 866 883 + 6.36 cctgctcaccacgccccc SP1 873 882 - 7.18 ggggcgtggt cEBP 894 905 - 7.25 ttatgcaaactc NFIL3 895 905 - 6.08 ttatgcaaact TBP 895 909 - 7.3 ttatttatgcaaact HLF 896 907 + 6.85 gtttgcataaat SQUA 896 909 - 8.74 ttatttatgcaaac FOXF2 897 910 + 10.9 tttgcataaataaa FOXL1 897 904 + 7.99 tttgcata HMG-IY 898 913 + 6.72 ttgcataaataaacaa TCF1 899 912 - 7.7 tgtttatttatgca Foxd3 900 911 - 9.1 gtttatttatgc FOXI1 900 911 - 8.05 gtttatttatgc HMG-IY 900 915 + 8.02 gcataaataaacaaat Foxa2 900 911 - 7.3 gtttatttatgc Hunchback 900 909 + 8.13 gcataaataa SQUA 900 913 + 7.51 gcataaataaacaa TBP 900 914 + 8.35 gcataaataaacaaa FOXF2 901 914 + 12.7 cataaataaacaaa FOXL1 901 908 + 6.07 cataaata Foxq1 901 911 - 6.54 gtttatttatg HMG-IY 901 916 + 7.14 cataaataaacaaatc Broad-complex_1 902 915 + 8.92 ataaataaacaaat FOXD1 902 909 + 6.72 ataaataa SQUA 902 915 + 11.3 ataaataaacaaat SRY 902 910 + 7.48 ataaataaa TBP 902 916 + 6.64 ataaataaacaaatc Broad-complex_1 903 916 + 13.2 taaataaacaaatc Broad-complex_3 903 913 + 7.44 taaataaacaa Hunchback 903 912 + 6.22 taaataaaca Broad-complex_2 904 911 - 6.22 gtttattt Broad-complex_4 904 914 + 10.4 aaataaacaaa Foxd3 904 915 - 13.6 atttgtttattt FOXI1 904 915 - 12.9 atttgtttattt Foxa2 904 915 - 11.6 atttgtttattt Hunchback 904 913 + 6.2 aaataaacaa ID1 904 915 - 6.1 atttgtttattt Foxq1 905 915 - 12 atttgtttatt FOXD1 906 913 + 8.63 ataaacaa SRY 906 914 + 9.24 ataaacaaa >NM_080810 (1000 bp) CLUSTER 1 Location: 716 to 916 Score: 9.14 MEF2A: 2.13 T: 1.1 Foxd3: 0.35 RREB1: 0.278 Broad-complex_1: 0.246 Pax2: 0.211 E74A: 0.205 Bapx1: 0.205 FOXI1: 0.197 SP1: 0.196 FOXF2: 0.153 SPI1: 0.103 Foxq1: 0.0943 Klf4: 0.0927 ESR1: 0.075 ZNF42_1-4: 0.0686 Macho-1: 0.0674 ABI4: 0.0668 c-ETS: 0.0592 GABPA: 0.0568 TBP: 0.046 TFAP2A: 0.0457 MNB1A: 0.0446 FOXL1: 0.0424 Foxa2: 0.041 Myf: 0.037 SQUA: 0.0359 ZNF42_5-13: 0.0302 Snail: 0.0289 PBF: 0.0232 Broad-complex_4: 0.0204 Dof2: 0.0174 En1: 0.0171 Arnt-Ahr: 0.0166 RUSH1-alfa: 0.0154 deltaEF1: 0.0145 IRF1: 0.0144 HMG-1: 0.0141 MA0021: 0.0124 MAX: 0.0117 Chop-cEBP: 0.0112 ELK1: 0.0103 ID1: 0.0102 MafB: 0.0101 HNF4: 0.0101 USF1: 0.00961 Spz1: 0.00917 TCF11-MafG: 0.00913 Arnt: 0.00904 ARR10: 0.00872 GATA3: 0.0085 HMG-IY: 0.0085 Pax5: 0.00844 E2F1: 0.00819 SRY: 0.00811 Gata1: 0.00796 NFKB1: 0.00778 Broad-complex_2: 0.00754 Fos: 0.00735 Nkx2-5: 0.00676 Mycn: 0.00657 FOXD1: 0.00644 REL: 0.00625 SPIB: 0.00568 RELA: 0.00542 FOXC1: 0.00531 Dorsal_1: 0.00516 Hunchback: 0.00512 Staf: 0.0051 Pax4: 0.00507 Dorsal_2: 0.00506 TEAD: 0.00453 Myb: 0.00428 AGL3: 0.00409 YY1: 0.00388 HAND1-TCF3: 0.00369 GATA2: 0.00365 cEBP: 0.0035 ELK4: 0.00349 TCF1: 0.00339 NHLH1: 0.00321 Sox5: 0.00321 Broad-complex_3: 0.00306 CFI-USP: 0.00292 RXR-VDR: 0.00216 CF2-II: 0.00213 Ubx: 0.00203 HLF: 0.00184 SOX9: 0.00182 CREB1: 0.00171 PPARG: 0.00164 MYB.ph3: 0.0016 MYC-MAX: 0.00142 Sox17: 0.0014 Gfi: 0.0014 NF-kappaB: 0.00137 GAMYB: 0.00135 NFIL3: 0.0013 Pax6: 0.00126 SU_h: 0.00115 Agamous: 0.00114 RORA: 0.00099 bZIP910: 0.000625 NR2F1: 0.000612 Hox11-CTF1: 0.000545 IRF2: 0.000483 Prrx2: 0.000465 NR3C1: 0.000408 RUNX1: 0.000316 Pbx: 0.00023 Athb-1: 0.000205 bZIP911: 0.000128 Ar: 0.000126 Roaz: 8.88e-05 TAL1-TCF3: 6.25e-05 TP53: 3.98e-05 RORA1: 3.62e-05 NF-Y: 3.03e-05 SRF: 2.21e-05 ATHB5: 1.89e-05 Evi1: 7.14e-06 PPARG-RXRA: 1.23e-06 NR1H2-RXR: 3.61e-07 CTCGGTGTGAAtccggagAAAGAGAGGGaagtgcagcgccagcTCCACTCCACACCCCCTTCCTGCCTATAAATAACCCCAAgTGTCACTTCAaagaggacggggagcgcggcagaggggctcccgggccggcgggctggggccgccggaCCTGCTCACCACGCCCCCcaccctgggcGAGTTTGCATAAATAAACAAATC T 716 726 + 9.57 ctcggtgtgaa Klf4 734 743 + 6.04 aaagagaggg Bapx1 759 767 - 6.76 tggagtgga RREB1 760 779 + 8.09 ccactccacacccccttcct GABPA 772 781 - 6.44 gcaggaaggg E74A 774 780 - 8.08 caggaag ELK1 774 783 - 6.4 aggcaggaag SPI1 774 779 - 7.05 aggaag c-ETS 774 779 + 6.71 cttcct Broad-complex_1 775 788 - 7.2 tttataggcaggaa TBP 775 789 - 6.88 atttataggcaggaa TBP 777 791 - 7.47 ttatttataggcagg SQUA 778 791 - 6.95 ttatttataggcag TCF1 780 793 - 7.58 ggttatttataggc AGL3 782 791 + 6.39 ctataaataa AGL3 782 791 - 7.33 ttatttatag Broad-complex_4 782 792 + 7.98 ctataaataac CF2-II 782 791 + 7.2 ctataaataa FOXI1 782 793 - 10.1 ggttatttatag MEF2A 782 791 + 9.45 ctataaataa MEF2A 782 791 - 13.4 ttatttatag TBP 782 796 + 10.2 ctataaataacccca Dorsal_1 783 794 - 6.94 gggttatttata FOXL1 783 790 + 8.66 tataaata FOXL1 783 790 - 7.45 tatttata Foxq1 783 793 - 7.65 ggttatttata FOXD1 784 791 + 6.52 ataaataa Macho-1 789 797 - 6.11 ttggggtta Pax2 799 806 + 7.68 tgtcactt Bapx1 800 808 - 6.86 tgaagtgac ESR1 866 883 + 6.36 cctgctcaccacgccccc SP1 873 882 - 7.18 ggggcgtggt cEBP 894 905 - 7.25 ttatgcaaactc NFIL3 895 905 - 6.08 ttatgcaaact TBP 895 909 - 7.3 ttatttatgcaaact HLF 896 907 + 6.85 gtttgcataaat SQUA 896 909 - 8.74 ttatttatgcaaac FOXF2 897 910 + 10.9 tttgcataaataaa FOXL1 897 904 + 7.99 tttgcata HMG-IY 898 913 + 6.72 ttgcataaataaacaa TCF1 899 912 - 7.7 tgtttatttatgca Foxd3 900 911 - 9.1 gtttatttatgc FOXI1 900 911 - 8.05 gtttatttatgc HMG-IY 900 915 + 8.02 gcataaataaacaaat Foxa2 900 911 - 7.3 gtttatttatgc Hunchback 900 909 + 8.13 gcataaataa SQUA 900 913 + 7.51 gcataaataaacaa TBP 900 914 + 8.35 gcataaataaacaaa FOXF2 901 914 + 12.7 cataaataaacaaa FOXL1 901 908 + 6.07 cataaata Foxq1 901 911 - 6.54 gtttatttatg HMG-IY 901 916 + 7.14 cataaataaacaaatc Broad-complex_1 902 915 + 8.92 ataaataaacaaat FOXD1 902 909 + 6.72 ataaataa SQUA 902 915 + 11.3 ataaataaacaaat SRY 902 910 + 7.48 ataaataaa TBP 902 916 + 6.64 ataaataaacaaatc Broad-complex_1 903 916 + 13.2 taaataaacaaatc Broad-complex_3 903 913 + 7.44 taaataaacaa Hunchback 903 912 + 6.22 taaataaaca Broad-complex_2 904 911 - 6.22 gtttattt Broad-complex_4 904 914 + 10.4 aaataaacaaa Foxd3 904 915 - 13.6 atttgtttattt FOXI1 904 915 - 12.9 atttgtttattt Foxa2 904 915 - 11.6 atttgtttattt Hunchback 904 913 + 6.2 aaataaacaa ID1 904 915 - 6.1 atttgtttattt Foxq1 905 915 - 12 atttgtttatt FOXD1 906 913 + 8.63 ataaacaa SRY 906 914 + 9.24 ataaacaaa >NM_080811 (1000 bp) CLUSTER 1 Location: 716 to 916 Score: 9.14 MEF2A: 2.13 T: 1.1 Foxd3: 0.35 RREB1: 0.278 Broad-complex_1: 0.246 Pax2: 0.211 E74A: 0.205 Bapx1: 0.205 FOXI1: 0.197 SP1: 0.196 FOXF2: 0.153 SPI1: 0.103 Foxq1: 0.0943 Klf4: 0.0927 ESR1: 0.075 ZNF42_1-4: 0.0686 Macho-1: 0.0674 ABI4: 0.0668 c-ETS: 0.0592 GABPA: 0.0568 TBP: 0.046 TFAP2A: 0.0457 MNB1A: 0.0446 FOXL1: 0.0424 Foxa2: 0.041 Myf: 0.037 SQUA: 0.0359 ZNF42_5-13: 0.0302 Snail: 0.0289 PBF: 0.0232 Broad-complex_4: 0.0204 Dof2: 0.0174 En1: 0.0171 Arnt-Ahr: 0.0166 RUSH1-alfa: 0.0154 deltaEF1: 0.0145 IRF1: 0.0144 HMG-1: 0.0141 MA0021: 0.0124 MAX: 0.0117 Chop-cEBP: 0.0112 ELK1: 0.0103 ID1: 0.0102 MafB: 0.0101 HNF4: 0.0101 USF1: 0.00961 Spz1: 0.00917 TCF11-MafG: 0.00913 Arnt: 0.00904 ARR10: 0.00872 GATA3: 0.0085 HMG-IY: 0.0085 Pax5: 0.00844 E2F1: 0.00819 SRY: 0.00811 Gata1: 0.00796 NFKB1: 0.00778 Broad-complex_2: 0.00754 Fos: 0.00735 Nkx2-5: 0.00676 Mycn: 0.00657 FOXD1: 0.00644 REL: 0.00625 SPIB: 0.00568 RELA: 0.00542 FOXC1: 0.00531 Dorsal_1: 0.00516 Hunchback: 0.00512 Staf: 0.0051 Pax4: 0.00507 Dorsal_2: 0.00506 TEAD: 0.00453 Myb: 0.00428 AGL3: 0.00409 YY1: 0.00388 HAND1-TCF3: 0.00369 GATA2: 0.00365 cEBP: 0.0035 ELK4: 0.00349 TCF1: 0.00339 NHLH1: 0.00321 Sox5: 0.00321 Broad-complex_3: 0.00306 CFI-USP: 0.00292 RXR-VDR: 0.00216 CF2-II: 0.00213 Ubx: 0.00203 HLF: 0.00184 SOX9: 0.00182 CREB1: 0.00171 PPARG: 0.00164 MYB.ph3: 0.0016 MYC-MAX: 0.00142 Sox17: 0.0014 Gfi: 0.0014 NF-kappaB: 0.00137 GAMYB: 0.00135 NFIL3: 0.0013 Pax6: 0.00126 SU_h: 0.00115 Agamous: 0.00114 RORA: 0.00099 bZIP910: 0.000625 NR2F1: 0.000612 Hox11-CTF1: 0.000545 IRF2: 0.000483 Prrx2: 0.000465 NR3C1: 0.000408 RUNX1: 0.000316 Pbx: 0.00023 Athb-1: 0.000205 bZIP911: 0.000128 Ar: 0.000126 Roaz: 8.88e-05 TAL1-TCF3: 6.25e-05 TP53: 3.98e-05 RORA1: 3.62e-05 NF-Y: 3.03e-05 SRF: 2.21e-05 ATHB5: 1.89e-05 Evi1: 7.14e-06 PPARG-RXRA: 1.23e-06 NR1H2-RXR: 3.61e-07 CTCGGTGTGAAtccggagAAAGAGAGGGaagtgcagcgccagcTCCACTCCACACCCCCTTCCTGCCTATAAATAACCCCAAgTGTCACTTCAaagaggacggggagcgcggcagaggggctcccgggccggcgggctggggccgccggaCCTGCTCACCACGCCCCCcaccctgggcGAGTTTGCATAAATAAACAAATC T 716 726 + 9.57 ctcggtgtgaa Klf4 734 743 + 6.04 aaagagaggg Bapx1 759 767 - 6.76 tggagtgga RREB1 760 779 + 8.09 ccactccacacccccttcct GABPA 772 781 - 6.44 gcaggaaggg E74A 774 780 - 8.08 caggaag ELK1 774 783 - 6.4 aggcaggaag SPI1 774 779 - 7.05 aggaag c-ETS 774 779 + 6.71 cttcct Broad-complex_1 775 788 - 7.2 tttataggcaggaa TBP 775 789 - 6.88 atttataggcaggaa TBP 777 791 - 7.47 ttatttataggcagg SQUA 778 791 - 6.95 ttatttataggcag TCF1 780 793 - 7.58 ggttatttataggc AGL3 782 791 + 6.39 ctataaataa AGL3 782 791 - 7.33 ttatttatag Broad-complex_4 782 792 + 7.98 ctataaataac CF2-II 782 791 + 7.2 ctataaataa FOXI1 782 793 - 10.1 ggttatttatag MEF2A 782 791 + 9.45 ctataaataa MEF2A 782 791 - 13.4 ttatttatag TBP 782 796 + 10.2 ctataaataacccca Dorsal_1 783 794 - 6.94 gggttatttata FOXL1 783 790 + 8.66 tataaata FOXL1 783 790 - 7.45 tatttata Foxq1 783 793 - 7.65 ggttatttata FOXD1 784 791 + 6.52 ataaataa Macho-1 789 797 - 6.11 ttggggtta Pax2 799 806 + 7.68 tgtcactt Bapx1 800 808 - 6.86 tgaagtgac ESR1 866 883 + 6.36 cctgctcaccacgccccc SP1 873 882 - 7.18 ggggcgtggt cEBP 894 905 - 7.25 ttatgcaaactc NFIL3 895 905 - 6.08 ttatgcaaact TBP 895 909 - 7.3 ttatttatgcaaact HLF 896 907 + 6.85 gtttgcataaat SQUA 896 909 - 8.74 ttatttatgcaaac FOXF2 897 910 + 10.9 tttgcataaataaa FOXL1 897 904 + 7.99 tttgcata HMG-IY 898 913 + 6.72 ttgcataaataaacaa TCF1 899 912 - 7.7 tgtttatttatgca Foxd3 900 911 - 9.1 gtttatttatgc FOXI1 900 911 - 8.05 gtttatttatgc HMG-IY 900 915 + 8.02 gcataaataaacaaat Foxa2 900 911 - 7.3 gtttatttatgc Hunchback 900 909 + 8.13 gcataaataa SQUA 900 913 + 7.51 gcataaataaacaa TBP 900 914 + 8.35 gcataaataaacaaa FOXF2 901 914 + 12.7 cataaataaacaaa FOXL1 901 908 + 6.07 cataaata Foxq1 901 911 - 6.54 gtttatttatg HMG-IY 901 916 + 7.14 cataaataaacaaatc Broad-complex_1 902 915 + 8.92 ataaataaacaaat FOXD1 902 909 + 6.72 ataaataa SQUA 902 915 + 11.3 ataaataaacaaat SRY 902 910 + 7.48 ataaataaa TBP 902 916 + 6.64 ataaataaacaaatc Broad-complex_1 903 916 + 13.2 taaataaacaaatc Broad-complex_3 903 913 + 7.44 taaataaacaa Hunchback 903 912 + 6.22 taaataaaca Broad-complex_2 904 911 - 6.22 gtttattt Broad-complex_4 904 914 + 10.4 aaataaacaaa Foxd3 904 915 - 13.6 atttgtttattt FOXI1 904 915 - 12.9 atttgtttattt Foxa2 904 915 - 11.6 atttgtttattt Hunchback 904 913 + 6.2 aaataaacaa ID1 904 915 - 6.1 atttgtttattt Foxq1 905 915 - 12 atttgtttatt FOXD1 906 913 + 8.63 ataaacaa SRY 906 914 + 9.24 ataaacaaa >NM_080812 (1000 bp) CLUSTER 1 Location: 716 to 916 Score: 9.14 MEF2A: 2.13 T: 1.1 Foxd3: 0.35 RREB1: 0.278 Broad-complex_1: 0.246 Pax2: 0.211 E74A: 0.205 Bapx1: 0.205 FOXI1: 0.197 SP1: 0.196 FOXF2: 0.153 SPI1: 0.103 Foxq1: 0.0943 Klf4: 0.0927 ESR1: 0.075 ZNF42_1-4: 0.0686 Macho-1: 0.0674 ABI4: 0.0668 c-ETS: 0.0592 GABPA: 0.0568 TBP: 0.046 TFAP2A: 0.0457 MNB1A: 0.0446 FOXL1: 0.0424 Foxa2: 0.041 Myf: 0.037 SQUA: 0.0359 ZNF42_5-13: 0.0302 Snail: 0.0289 PBF: 0.0232 Broad-complex_4: 0.0204 Dof2: 0.0174 En1: 0.0171 Arnt-Ahr: 0.0166 RUSH1-alfa: 0.0154 deltaEF1: 0.0145 IRF1: 0.0144 HMG-1: 0.0141 MA0021: 0.0124 MAX: 0.0117 Chop-cEBP: 0.0112 ELK1: 0.0103 ID1: 0.0102 MafB: 0.0101 HNF4: 0.0101 USF1: 0.00961 Spz1: 0.00917 TCF11-MafG: 0.00913 Arnt: 0.00904 ARR10: 0.00872 GATA3: 0.0085 HMG-IY: 0.0085 Pax5: 0.00844 E2F1: 0.00819 SRY: 0.00811 Gata1: 0.00796 NFKB1: 0.00778 Broad-complex_2: 0.00754 Fos: 0.00735 Nkx2-5: 0.00676 Mycn: 0.00657 FOXD1: 0.00644 REL: 0.00625 SPIB: 0.00568 RELA: 0.00542 FOXC1: 0.00531 Dorsal_1: 0.00516 Hunchback: 0.00512 Staf: 0.0051 Pax4: 0.00507 Dorsal_2: 0.00506 TEAD: 0.00453 Myb: 0.00428 AGL3: 0.00409 YY1: 0.00388 HAND1-TCF3: 0.00369 GATA2: 0.00365 cEBP: 0.0035 ELK4: 0.00349 TCF1: 0.00339 NHLH1: 0.00321 Sox5: 0.00321 Broad-complex_3: 0.00306 CFI-USP: 0.00292 RXR-VDR: 0.00216 CF2-II: 0.00213 Ubx: 0.00203 HLF: 0.00184 SOX9: 0.00182 CREB1: 0.00171 PPARG: 0.00164 MYB.ph3: 0.0016 MYC-MAX: 0.00142 Sox17: 0.0014 Gfi: 0.0014 NF-kappaB: 0.00137 GAMYB: 0.00135 NFIL3: 0.0013 Pax6: 0.00126 SU_h: 0.00115 Agamous: 0.00114 RORA: 0.00099 bZIP910: 0.000625 NR2F1: 0.000612 Hox11-CTF1: 0.000545 IRF2: 0.000483 Prrx2: 0.000465 NR3C1: 0.000408 RUNX1: 0.000316 Pbx: 0.00023 Athb-1: 0.000205 bZIP911: 0.000128 Ar: 0.000126 Roaz: 8.88e-05 TAL1-TCF3: 6.25e-05 TP53: 3.98e-05 RORA1: 3.62e-05 NF-Y: 3.03e-05 SRF: 2.21e-05 ATHB5: 1.89e-05 Evi1: 7.14e-06 PPARG-RXRA: 1.23e-06 NR1H2-RXR: 3.61e-07 CTCGGTGTGAAtccggagAAAGAGAGGGaagtgcagcgccagcTCCACTCCACACCCCCTTCCTGCCTATAAATAACCCCAAgTGTCACTTCAaagaggacggggagcgcggcagaggggctcccgggccggcgggctggggccgccggaCCTGCTCACCACGCCCCCcaccctgggcGAGTTTGCATAAATAAACAAATC T 716 726 + 9.57 ctcggtgtgaa Klf4 734 743 + 6.04 aaagagaggg Bapx1 759 767 - 6.76 tggagtgga RREB1 760 779 + 8.09 ccactccacacccccttcct GABPA 772 781 - 6.44 gcaggaaggg E74A 774 780 - 8.08 caggaag ELK1 774 783 - 6.4 aggcaggaag SPI1 774 779 - 7.05 aggaag c-ETS 774 779 + 6.71 cttcct Broad-complex_1 775 788 - 7.2 tttataggcaggaa TBP 775 789 - 6.88 atttataggcaggaa TBP 777 791 - 7.47 ttatttataggcagg SQUA 778 791 - 6.95 ttatttataggcag TCF1 780 793 - 7.58 ggttatttataggc AGL3 782 791 + 6.39 ctataaataa AGL3 782 791 - 7.33 ttatttatag Broad-complex_4 782 792 + 7.98 ctataaataac CF2-II 782 791 + 7.2 ctataaataa FOXI1 782 793 - 10.1 ggttatttatag MEF2A 782 791 + 9.45 ctataaataa MEF2A 782 791 - 13.4 ttatttatag TBP 782 796 + 10.2 ctataaataacccca Dorsal_1 783 794 - 6.94 gggttatttata FOXL1 783 790 + 8.66 tataaata FOXL1 783 790 - 7.45 tatttata Foxq1 783 793 - 7.65 ggttatttata FOXD1 784 791 + 6.52 ataaataa Macho-1 789 797 - 6.11 ttggggtta Pax2 799 806 + 7.68 tgtcactt Bapx1 800 808 - 6.86 tgaagtgac ESR1 866 883 + 6.36 cctgctcaccacgccccc SP1 873 882 - 7.18 ggggcgtggt cEBP 894 905 - 7.25 ttatgcaaactc NFIL3 895 905 - 6.08 ttatgcaaact TBP 895 909 - 7.3 ttatttatgcaaact HLF 896 907 + 6.85 gtttgcataaat SQUA 896 909 - 8.74 ttatttatgcaaac FOXF2 897 910 + 10.9 tttgcataaataaa FOXL1 897 904 + 7.99 tttgcata HMG-IY 898 913 + 6.72 ttgcataaataaacaa TCF1 899 912 - 7.7 tgtttatttatgca Foxd3 900 911 - 9.1 gtttatttatgc FOXI1 900 911 - 8.05 gtttatttatgc HMG-IY 900 915 + 8.02 gcataaataaacaaat Foxa2 900 911 - 7.3 gtttatttatgc Hunchback 900 909 + 8.13 gcataaataa SQUA 900 913 + 7.51 gcataaataaacaa TBP 900 914 + 8.35 gcataaataaacaaa FOXF2 901 914 + 12.7 cataaataaacaaa FOXL1 901 908 + 6.07 cataaata Foxq1 901 911 - 6.54 gtttatttatg HMG-IY 901 916 + 7.14 cataaataaacaaatc Broad-complex_1 902 915 + 8.92 ataaataaacaaat FOXD1 902 909 + 6.72 ataaataa SQUA 902 915 + 11.3 ataaataaacaaat SRY 902 910 + 7.48 ataaataaa TBP 902 916 + 6.64 ataaataaacaaatc Broad-complex_1 903 916 + 13.2 taaataaacaaatc Broad-complex_3 903 913 + 7.44 taaataaacaa Hunchback 903 912 + 6.22 taaataaaca Broad-complex_2 904 911 - 6.22 gtttattt Broad-complex_4 904 914 + 10.4 aaataaacaaa Foxd3 904 915 - 13.6 atttgtttattt FOXI1 904 915 - 12.9 atttgtttattt Foxa2 904 915 - 11.6 atttgtttattt Hunchback 904 913 + 6.2 aaataaacaa ID1 904 915 - 6.1 atttgtttattt Foxq1 905 915 - 12 atttgtttatt FOXD1 906 913 + 8.63 ataaacaa SRY 906 914 + 9.24 ataaacaaa >NM_080813 (1000 bp) CLUSTER 1 Location: 716 to 916 Score: 9.14 MEF2A: 2.13 T: 1.1 Foxd3: 0.35 RREB1: 0.278 Broad-complex_1: 0.246 Pax2: 0.211 E74A: 0.205 Bapx1: 0.205 FOXI1: 0.197 SP1: 0.196 FOXF2: 0.153 SPI1: 0.103 Foxq1: 0.0943 Klf4: 0.0927 ESR1: 0.075 ZNF42_1-4: 0.0686 Macho-1: 0.0674 ABI4: 0.0668 c-ETS: 0.0592 GABPA: 0.0568 TBP: 0.046 TFAP2A: 0.0457 MNB1A: 0.0446 FOXL1: 0.0424 Foxa2: 0.041 Myf: 0.037 SQUA: 0.0359 ZNF42_5-13: 0.0302 Snail: 0.0289 PBF: 0.0232 Broad-complex_4: 0.0204 Dof2: 0.0174 En1: 0.0171 Arnt-Ahr: 0.0166 RUSH1-alfa: 0.0154 deltaEF1: 0.0145 IRF1: 0.0144 HMG-1: 0.0141 MA0021: 0.0124 MAX: 0.0117 Chop-cEBP: 0.0112 ELK1: 0.0103 ID1: 0.0102 MafB: 0.0101 HNF4: 0.0101 USF1: 0.00961 Spz1: 0.00917 TCF11-MafG: 0.00913 Arnt: 0.00904 ARR10: 0.00872 GATA3: 0.0085 HMG-IY: 0.0085 Pax5: 0.00844 E2F1: 0.00819 SRY: 0.00811 Gata1: 0.00796 NFKB1: 0.00778 Broad-complex_2: 0.00754 Fos: 0.00735 Nkx2-5: 0.00676 Mycn: 0.00657 FOXD1: 0.00644 REL: 0.00625 SPIB: 0.00568 RELA: 0.00542 FOXC1: 0.00531 Dorsal_1: 0.00516 Hunchback: 0.00512 Staf: 0.0051 Pax4: 0.00507 Dorsal_2: 0.00506 TEAD: 0.00453 Myb: 0.00428 AGL3: 0.00409 YY1: 0.00388 HAND1-TCF3: 0.00369 GATA2: 0.00365 cEBP: 0.0035 ELK4: 0.00349 TCF1: 0.00339 NHLH1: 0.00321 Sox5: 0.00321 Broad-complex_3: 0.00306 CFI-USP: 0.00292 RXR-VDR: 0.00216 CF2-II: 0.00213 Ubx: 0.00203 HLF: 0.00184 SOX9: 0.00182 CREB1: 0.00171 PPARG: 0.00164 MYB.ph3: 0.0016 MYC-MAX: 0.00142 Sox17: 0.0014 Gfi: 0.0014 NF-kappaB: 0.00137 GAMYB: 0.00135 NFIL3: 0.0013 Pax6: 0.00126 SU_h: 0.00115 Agamous: 0.00114 RORA: 0.00099 bZIP910: 0.000625 NR2F1: 0.000612 Hox11-CTF1: 0.000545 IRF2: 0.000483 Prrx2: 0.000465 NR3C1: 0.000408 RUNX1: 0.000316 Pbx: 0.00023 Athb-1: 0.000205 bZIP911: 0.000128 Ar: 0.000126 Roaz: 8.88e-05 TAL1-TCF3: 6.25e-05 TP53: 3.98e-05 RORA1: 3.62e-05 NF-Y: 3.03e-05 SRF: 2.21e-05 ATHB5: 1.89e-05 Evi1: 7.14e-06 PPARG-RXRA: 1.23e-06 NR1H2-RXR: 3.61e-07 CTCGGTGTGAAtccggagAAAGAGAGGGaagtgcagcgccagcTCCACTCCACACCCCCTTCCTGCCTATAAATAACCCCAAgTGTCACTTCAaagaggacggggagcgcggcagaggggctcccgggccggcgggctggggccgccggaCCTGCTCACCACGCCCCCcaccctgggcGAGTTTGCATAAATAAACAAATC T 716 726 + 9.57 ctcggtgtgaa Klf4 734 743 + 6.04 aaagagaggg Bapx1 759 767 - 6.76 tggagtgga RREB1 760 779 + 8.09 ccactccacacccccttcct GABPA 772 781 - 6.44 gcaggaaggg E74A 774 780 - 8.08 caggaag ELK1 774 783 - 6.4 aggcaggaag SPI1 774 779 - 7.05 aggaag c-ETS 774 779 + 6.71 cttcct Broad-complex_1 775 788 - 7.2 tttataggcaggaa TBP 775 789 - 6.88 atttataggcaggaa TBP 777 791 - 7.47 ttatttataggcagg SQUA 778 791 - 6.95 ttatttataggcag TCF1 780 793 - 7.58 ggttatttataggc AGL3 782 791 + 6.39 ctataaataa AGL3 782 791 - 7.33 ttatttatag Broad-complex_4 782 792 + 7.98 ctataaataac CF2-II 782 791 + 7.2 ctataaataa FOXI1 782 793 - 10.1 ggttatttatag MEF2A 782 791 + 9.45 ctataaataa MEF2A 782 791 - 13.4 ttatttatag TBP 782 796 + 10.2 ctataaataacccca Dorsal_1 783 794 - 6.94 gggttatttata FOXL1 783 790 + 8.66 tataaata FOXL1 783 790 - 7.45 tatttata Foxq1 783 793 - 7.65 ggttatttata FOXD1 784 791 + 6.52 ataaataa Macho-1 789 797 - 6.11 ttggggtta Pax2 799 806 + 7.68 tgtcactt Bapx1 800 808 - 6.86 tgaagtgac ESR1 866 883 + 6.36 cctgctcaccacgccccc SP1 873 882 - 7.18 ggggcgtggt cEBP 894 905 - 7.25 ttatgcaaactc NFIL3 895 905 - 6.08 ttatgcaaact TBP 895 909 - 7.3 ttatttatgcaaact HLF 896 907 + 6.85 gtttgcataaat SQUA 896 909 - 8.74 ttatttatgcaaac FOXF2 897 910 + 10.9 tttgcataaataaa FOXL1 897 904 + 7.99 tttgcata HMG-IY 898 913 + 6.72 ttgcataaataaacaa TCF1 899 912 - 7.7 tgtttatttatgca Foxd3 900 911 - 9.1 gtttatttatgc FOXI1 900 911 - 8.05 gtttatttatgc HMG-IY 900 915 + 8.02 gcataaataaacaaat Foxa2 900 911 - 7.3 gtttatttatgc Hunchback 900 909 + 8.13 gcataaataa SQUA 900 913 + 7.51 gcataaataaacaa TBP 900 914 + 8.35 gcataaataaacaaa FOXF2 901 914 + 12.7 cataaataaacaaa FOXL1 901 908 + 6.07 cataaata Foxq1 901 911 - 6.54 gtttatttatg HMG-IY 901 916 + 7.14 cataaataaacaaatc Broad-complex_1 902 915 + 8.92 ataaataaacaaat FOXD1 902 909 + 6.72 ataaataa SQUA 902 915 + 11.3 ataaataaacaaat SRY 902 910 + 7.48 ataaataaa TBP 902 916 + 6.64 ataaataaacaaatc Broad-complex_1 903 916 + 13.2 taaataaacaaatc Broad-complex_3 903 913 + 7.44 taaataaacaa Hunchback 903 912 + 6.22 taaataaaca Broad-complex_2 904 911 - 6.22 gtttattt Broad-complex_4 904 914 + 10.4 aaataaacaaa Foxd3 904 915 - 13.6 atttgtttattt FOXI1 904 915 - 12.9 atttgtttattt Foxa2 904 915 - 11.6 atttgtttattt Hunchback 904 913 + 6.2 aaataaacaa ID1 904 915 - 6.1 atttgtttattt Foxq1 905 915 - 12 atttgtttatt FOXD1 906 913 + 8.63 ataaacaa SRY 906 914 + 9.24 ataaacaaa >NM_080814 (1000 bp) CLUSTER 1 Location: 716 to 916 Score: 9.14 MEF2A: 2.13 T: 1.1 Foxd3: 0.35 RREB1: 0.278 Broad-complex_1: 0.246 Pax2: 0.211 E74A: 0.205 Bapx1: 0.205 FOXI1: 0.197 SP1: 0.196 FOXF2: 0.153 SPI1: 0.103 Foxq1: 0.0943 Klf4: 0.0927 ESR1: 0.075 ZNF42_1-4: 0.0686 Macho-1: 0.0674 ABI4: 0.0668 c-ETS: 0.0592 GABPA: 0.0568 TBP: 0.046 TFAP2A: 0.0457 MNB1A: 0.0446 FOXL1: 0.0424 Foxa2: 0.041 Myf: 0.037 SQUA: 0.0359 ZNF42_5-13: 0.0302 Snail: 0.0289 PBF: 0.0232 Broad-complex_4: 0.0204 Dof2: 0.0174 En1: 0.0171 Arnt-Ahr: 0.0166 RUSH1-alfa: 0.0154 deltaEF1: 0.0145 IRF1: 0.0144 HMG-1: 0.0141 MA0021: 0.0124 MAX: 0.0117 Chop-cEBP: 0.0112 ELK1: 0.0103 ID1: 0.0102 MafB: 0.0101 HNF4: 0.0101 USF1: 0.00961 Spz1: 0.00917 TCF11-MafG: 0.00913 Arnt: 0.00904 ARR10: 0.00872 GATA3: 0.0085 HMG-IY: 0.0085 Pax5: 0.00844 E2F1: 0.00819 SRY: 0.00811 Gata1: 0.00796 NFKB1: 0.00778 Broad-complex_2: 0.00754 Fos: 0.00735 Nkx2-5: 0.00676 Mycn: 0.00657 FOXD1: 0.00644 REL: 0.00625 SPIB: 0.00568 RELA: 0.00542 FOXC1: 0.00531 Dorsal_1: 0.00516 Hunchback: 0.00512 Staf: 0.0051 Pax4: 0.00507 Dorsal_2: 0.00506 TEAD: 0.00453 Myb: 0.00428 AGL3: 0.00409 YY1: 0.00388 HAND1-TCF3: 0.00369 GATA2: 0.00365 cEBP: 0.0035 ELK4: 0.00349 TCF1: 0.00339 NHLH1: 0.00321 Sox5: 0.00321 Broad-complex_3: 0.00306 CFI-USP: 0.00292 RXR-VDR: 0.00216 CF2-II: 0.00213 Ubx: 0.00203 HLF: 0.00184 SOX9: 0.00182 CREB1: 0.00171 PPARG: 0.00164 MYB.ph3: 0.0016 MYC-MAX: 0.00142 Sox17: 0.0014 Gfi: 0.0014 NF-kappaB: 0.00137 GAMYB: 0.00135 NFIL3: 0.0013 Pax6: 0.00126 SU_h: 0.00115 Agamous: 0.00114 RORA: 0.00099 bZIP910: 0.000625 NR2F1: 0.000612 Hox11-CTF1: 0.000545 IRF2: 0.000483 Prrx2: 0.000465 NR3C1: 0.000408 RUNX1: 0.000316 Pbx: 0.00023 Athb-1: 0.000205 bZIP911: 0.000128 Ar: 0.000126 Roaz: 8.88e-05 TAL1-TCF3: 6.25e-05 TP53: 3.98e-05 RORA1: 3.62e-05 NF-Y: 3.03e-05 SRF: 2.21e-05 ATHB5: 1.89e-05 Evi1: 7.14e-06 PPARG-RXRA: 1.23e-06 NR1H2-RXR: 3.61e-07 CTCGGTGTGAAtccggagAAAGAGAGGGaagtgcagcgccagcTCCACTCCACACCCCCTTCCTGCCTATAAATAACCCCAAgTGTCACTTCAaagaggacggggagcgcggcagaggggctcccgggccggcgggctggggccgccggaCCTGCTCACCACGCCCCCcaccctgggcGAGTTTGCATAAATAAACAAATC T 716 726 + 9.57 ctcggtgtgaa Klf4 734 743 + 6.04 aaagagaggg Bapx1 759 767 - 6.76 tggagtgga RREB1 760 779 + 8.09 ccactccacacccccttcct GABPA 772 781 - 6.44 gcaggaaggg E74A 774 780 - 8.08 caggaag ELK1 774 783 - 6.4 aggcaggaag SPI1 774 779 - 7.05 aggaag c-ETS 774 779 + 6.71 cttcct Broad-complex_1 775 788 - 7.2 tttataggcaggaa TBP 775 789 - 6.88 atttataggcaggaa TBP 777 791 - 7.47 ttatttataggcagg SQUA 778 791 - 6.95 ttatttataggcag TCF1 780 793 - 7.58 ggttatttataggc AGL3 782 791 + 6.39 ctataaataa AGL3 782 791 - 7.33 ttatttatag Broad-complex_4 782 792 + 7.98 ctataaataac CF2-II 782 791 + 7.2 ctataaataa FOXI1 782 793 - 10.1 ggttatttatag MEF2A 782 791 + 9.45 ctataaataa MEF2A 782 791 - 13.4 ttatttatag TBP 782 796 + 10.2 ctataaataacccca Dorsal_1 783 794 - 6.94 gggttatttata FOXL1 783 790 + 8.66 tataaata FOXL1 783 790 - 7.45 tatttata Foxq1 783 793 - 7.65 ggttatttata FOXD1 784 791 + 6.52 ataaataa Macho-1 789 797 - 6.11 ttggggtta Pax2 799 806 + 7.68 tgtcactt Bapx1 800 808 - 6.86 tgaagtgac ESR1 866 883 + 6.36 cctgctcaccacgccccc SP1 873 882 - 7.18 ggggcgtggt cEBP 894 905 - 7.25 ttatgcaaactc NFIL3 895 905 - 6.08 ttatgcaaact TBP 895 909 - 7.3 ttatttatgcaaact HLF 896 907 + 6.85 gtttgcataaat SQUA 896 909 - 8.74 ttatttatgcaaac FOXF2 897 910 + 10.9 tttgcataaataaa FOXL1 897 904 + 7.99 tttgcata HMG-IY 898 913 + 6.72 ttgcataaataaacaa TCF1 899 912 - 7.7 tgtttatttatgca Foxd3 900 911 - 9.1 gtttatttatgc FOXI1 900 911 - 8.05 gtttatttatgc HMG-IY 900 915 + 8.02 gcataaataaacaaat Foxa2 900 911 - 7.3 gtttatttatgc Hunchback 900 909 + 8.13 gcataaataa SQUA 900 913 + 7.51 gcataaataaacaa TBP 900 914 + 8.35 gcataaataaacaaa FOXF2 901 914 + 12.7 cataaataaacaaa FOXL1 901 908 + 6.07 cataaata Foxq1 901 911 - 6.54 gtttatttatg HMG-IY 901 916 + 7.14 cataaataaacaaatc Broad-complex_1 902 915 + 8.92 ataaataaacaaat FOXD1 902 909 + 6.72 ataaataa SQUA 902 915 + 11.3 ataaataaacaaat SRY 902 910 + 7.48 ataaataaa TBP 902 916 + 6.64 ataaataaacaaatc Broad-complex_1 903 916 + 13.2 taaataaacaaatc Broad-complex_3 903 913 + 7.44 taaataaacaa Hunchback 903 912 + 6.22 taaataaaca Broad-complex_2 904 911 - 6.22 gtttattt Broad-complex_4 904 914 + 10.4 aaataaacaaa Foxd3 904 915 - 13.6 atttgtttattt FOXI1 904 915 - 12.9 atttgtttattt Foxa2 904 915 - 11.6 atttgtttattt Hunchback 904 913 + 6.2 aaataaacaa ID1 904 915 - 6.1 atttgtttattt Foxq1 905 915 - 12 atttgtttatt FOXD1 906 913 + 8.63 ataaacaa SRY 906 914 + 9.24 ataaacaaa >NM_080815 (1000 bp) CLUSTER 1 Location: 716 to 916 Score: 9.14 MEF2A: 2.13 T: 1.1 Foxd3: 0.35 RREB1: 0.278 Broad-complex_1: 0.246 Pax2: 0.211 E74A: 0.205 Bapx1: 0.205 FOXI1: 0.197 SP1: 0.196 FOXF2: 0.153 SPI1: 0.103 Foxq1: 0.0943 Klf4: 0.0927 ESR1: 0.075 ZNF42_1-4: 0.0686 Macho-1: 0.0674 ABI4: 0.0668 c-ETS: 0.0592 GABPA: 0.0568 TBP: 0.046 TFAP2A: 0.0457 MNB1A: 0.0446 FOXL1: 0.0424 Foxa2: 0.041 Myf: 0.037 SQUA: 0.0359 ZNF42_5-13: 0.0302 Snail: 0.0289 PBF: 0.0232 Broad-complex_4: 0.0204 Dof2: 0.0174 En1: 0.0171 Arnt-Ahr: 0.0166 RUSH1-alfa: 0.0154 deltaEF1: 0.0145 IRF1: 0.0144 HMG-1: 0.0141 MA0021: 0.0124 MAX: 0.0117 Chop-cEBP: 0.0112 ELK1: 0.0103 ID1: 0.0102 MafB: 0.0101 HNF4: 0.0101 USF1: 0.00961 Spz1: 0.00917 TCF11-MafG: 0.00913 Arnt: 0.00904 ARR10: 0.00872 GATA3: 0.0085 HMG-IY: 0.0085 Pax5: 0.00844 E2F1: 0.00819 SRY: 0.00811 Gata1: 0.00796 NFKB1: 0.00778 Broad-complex_2: 0.00754 Fos: 0.00735 Nkx2-5: 0.00676 Mycn: 0.00657 FOXD1: 0.00644 REL: 0.00625 SPIB: 0.00568 RELA: 0.00542 FOXC1: 0.00531 Dorsal_1: 0.00516 Hunchback: 0.00512 Staf: 0.0051 Pax4: 0.00507 Dorsal_2: 0.00506 TEAD: 0.00453 Myb: 0.00428 AGL3: 0.00409 YY1: 0.00388 HAND1-TCF3: 0.00369 GATA2: 0.00365 cEBP: 0.0035 ELK4: 0.00349 TCF1: 0.00339 NHLH1: 0.00321 Sox5: 0.00321 Broad-complex_3: 0.00306 CFI-USP: 0.00292 RXR-VDR: 0.00216 CF2-II: 0.00213 Ubx: 0.00203 HLF: 0.00184 SOX9: 0.00182 CREB1: 0.00171 PPARG: 0.00164 MYB.ph3: 0.0016 MYC-MAX: 0.00142 Sox17: 0.0014 Gfi: 0.0014 NF-kappaB: 0.00137 GAMYB: 0.00135 NFIL3: 0.0013 Pax6: 0.00126 SU_h: 0.00115 Agamous: 0.00114 RORA: 0.00099 bZIP910: 0.000625 NR2F1: 0.000612 Hox11-CTF1: 0.000545 IRF2: 0.000483 Prrx2: 0.000465 NR3C1: 0.000408 RUNX1: 0.000316 Pbx: 0.00023 Athb-1: 0.000205 bZIP911: 0.000128 Ar: 0.000126 Roaz: 8.88e-05 TAL1-TCF3: 6.25e-05 TP53: 3.98e-05 RORA1: 3.62e-05 NF-Y: 3.03e-05 SRF: 2.21e-05 ATHB5: 1.89e-05 Evi1: 7.14e-06 PPARG-RXRA: 1.23e-06 NR1H2-RXR: 3.61e-07 CTCGGTGTGAAtccggagAAAGAGAGGGaagtgcagcgccagcTCCACTCCACACCCCCTTCCTGCCTATAAATAACCCCAAgTGTCACTTCAaagaggacggggagcgcggcagaggggctcccgggccggcgggctggggccgccggaCCTGCTCACCACGCCCCCcaccctgggcGAGTTTGCATAAATAAACAAATC T 716 726 + 9.57 ctcggtgtgaa Klf4 734 743 + 6.04 aaagagaggg Bapx1 759 767 - 6.76 tggagtgga RREB1 760 779 + 8.09 ccactccacacccccttcct GABPA 772 781 - 6.44 gcaggaaggg E74A 774 780 - 8.08 caggaag ELK1 774 783 - 6.4 aggcaggaag SPI1 774 779 - 7.05 aggaag c-ETS 774 779 + 6.71 cttcct Broad-complex_1 775 788 - 7.2 tttataggcaggaa TBP 775 789 - 6.88 atttataggcaggaa TBP 777 791 - 7.47 ttatttataggcagg SQUA 778 791 - 6.95 ttatttataggcag TCF1 780 793 - 7.58 ggttatttataggc AGL3 782 791 + 6.39 ctataaataa AGL3 782 791 - 7.33 ttatttatag Broad-complex_4 782 792 + 7.98 ctataaataac CF2-II 782 791 + 7.2 ctataaataa FOXI1 782 793 - 10.1 ggttatttatag MEF2A 782 791 + 9.45 ctataaataa MEF2A 782 791 - 13.4 ttatttatag TBP 782 796 + 10.2 ctataaataacccca Dorsal_1 783 794 - 6.94 gggttatttata FOXL1 783 790 + 8.66 tataaata FOXL1 783 790 - 7.45 tatttata Foxq1 783 793 - 7.65 ggttatttata FOXD1 784 791 + 6.52 ataaataa Macho-1 789 797 - 6.11 ttggggtta Pax2 799 806 + 7.68 tgtcactt Bapx1 800 808 - 6.86 tgaagtgac ESR1 866 883 + 6.36 cctgctcaccacgccccc SP1 873 882 - 7.18 ggggcgtggt cEBP 894 905 - 7.25 ttatgcaaactc NFIL3 895 905 - 6.08 ttatgcaaact TBP 895 909 - 7.3 ttatttatgcaaact HLF 896 907 + 6.85 gtttgcataaat SQUA 896 909 - 8.74 ttatttatgcaaac FOXF2 897 910 + 10.9 tttgcataaataaa FOXL1 897 904 + 7.99 tttgcata HMG-IY 898 913 + 6.72 ttgcataaataaacaa TCF1 899 912 - 7.7 tgtttatttatgca Foxd3 900 911 - 9.1 gtttatttatgc FOXI1 900 911 - 8.05 gtttatttatgc HMG-IY 900 915 + 8.02 gcataaataaacaaat Foxa2 900 911 - 7.3 gtttatttatgc Hunchback 900 909 + 8.13 gcataaataa SQUA 900 913 + 7.51 gcataaataaacaa TBP 900 914 + 8.35 gcataaataaacaaa FOXF2 901 914 + 12.7 cataaataaacaaa FOXL1 901 908 + 6.07 cataaata Foxq1 901 911 - 6.54 gtttatttatg HMG-IY 901 916 + 7.14 cataaataaacaaatc Broad-complex_1 902 915 + 8.92 ataaataaacaaat FOXD1 902 909 + 6.72 ataaataa SQUA 902 915 + 11.3 ataaataaacaaat SRY 902 910 + 7.48 ataaataaa TBP 902 916 + 6.64 ataaataaacaaatc Broad-complex_1 903 916 + 13.2 taaataaacaaatc Broad-complex_3 903 913 + 7.44 taaataaacaa Hunchback 903 912 + 6.22 taaataaaca Broad-complex_2 904 911 - 6.22 gtttattt Broad-complex_4 904 914 + 10.4 aaataaacaaa Foxd3 904 915 - 13.6 atttgtttattt FOXI1 904 915 - 12.9 atttgtttattt Foxa2 904 915 - 11.6 atttgtttattt Hunchback 904 913 + 6.2 aaataaacaa ID1 904 915 - 6.1 atttgtttattt Foxq1 905 915 - 12 atttgtttatt FOXD1 906 913 + 8.63 ataaacaa SRY 906 914 + 9.24 ataaacaaa >NM_003302 (1000 bp) CLUSTER 1 Location: 876 to 985 Score: 7.22 TEAD: 1.27 ID1: 0.719 AGL3: 0.643 bZIP910: 0.44 CREB1: 0.355 bZIP911: 0.306 Hunchback: 0.293 MAX: 0.184 USF1: 0.162 ZNF42_1-4: 0.137 SP1: 0.113 Broad-complex_4: 0.106 Mycn: 0.0981 Arnt: 0.0904 SPIB: 0.0569 HAND1-TCF3: 0.0538 Prrx2: 0.0505 MYC-MAX: 0.0489 HMG-IY: 0.0488 Agamous: 0.0485 Dof2: 0.0442 SQUA: 0.0412 Klf4: 0.0401 IRF1: 0.0374 TCF11-MafG: 0.0369 MNB1A: 0.0322 PBF: 0.0284 Broad-complex_1: 0.0276 Dorsal_2: 0.026 MA0021: 0.0251 HLF: 0.0234 Evi1: 0.0233 c-ETS: 0.0224 Foxd3: 0.0209 Broad-complex_3: 0.0202 E74A: 0.019 SPI1: 0.0184 HMG-1: 0.017 Arnt-Ahr: 0.017 RUSH1-alfa: 0.0161 Macho-1: 0.0156 CFI-USP: 0.015 En1: 0.0147 MEF2A: 0.0135 Ubx: 0.0124 Pax2: 0.00963 ZNF42_5-13: 0.00895 GABPA: 0.00878 MafB: 0.00878 NR3C1: 0.0072 Dorsal_1: 0.00668 Broad-complex_2: 0.00651 ESR1: 0.00645 MYB.ph3: 0.00604 Pax4: 0.00569 ELK1: 0.00467 YY1: 0.00443 SRY: 0.00409 IRF2: 0.00407 Gata1: 0.00395 deltaEF1: 0.00374 GATA2: 0.00361 GAMYB: 0.00307 REL: 0.00285 E2F1: 0.00282 RUNX1: 0.00275 Spz1: 0.00236 NF-kappaB: 0.00201 NFKB1: 0.00156 Foxa2: 0.00149 FOXD1: 0.00148 Nkx2-5: 0.00136 GATA3: 0.00127 Snail: 0.00122 FOXL1: 0.00121 TFAP2A: 0.0011 Fos: 0.00109 FOXC1: 0.00109 Pax5: 0.000935 NFIL3: 0.000917 Sox17: 0.000917 Foxq1: 0.000789 RORA: 0.00078 Athb-1: 0.000744 TCF1: 0.000733 ARR10: 0.000722 FOXI1: 0.000673 FOXF2: 0.000668 Bapx1: 0.000636 TBP: 0.000625 Staf: 0.000613 SRF: 0.000585 ELK4: 0.000512 SOX9: 0.000452 Sox5: 0.000432 HNF4: 0.000349 NR2F1: 0.000337 cEBP: 0.000304 RELA: 0.000288 ABI4: 0.000267 Gfi: 0.000236 SU_h: 0.000212 Myb: 0.000164 Pax6: 0.000139 ATHB5: 0.000122 Chop-cEBP: 9.29e-05 Myf: 8.93e-05 Pbx: 5.88e-05 RXR-VDR: 5.19e-05 NF-Y: 3.7e-05 PPARG: 3.07e-05 TP53: 1.54e-05 RREB1: 1.46e-05 RORA1: 1.35e-05 Hox11-CTF1: 1.22e-05 NHLH1: 7.81e-06 Ar: 7.68e-06 TAL1-TCF3: 4.65e-06 CF2-II: 3.05e-06 T: 2.73e-06 Roaz: 1.33e-06 PPARG-RXRA: 3.95e-08 NR1H2-RXR: 1.05e-08 GGCCACGTGACCCTCCCCCAGGAATGTGGTGACGTCATCGGAGGCGTGGTcgTCCCCAAAATTAGGgaggaAGAGGAAAAAAAAAAGCCAGAAAAAGTTTTCTTTTCTGG MAX 876 885 + 8.25 ggccacgtga MYC-MAX 876 886 + 6.27 ggccacgtgac bZIP911 876 887 - 9.12 ggtcacgtggcc MYC-MAX 877 887 - 7.16 ggtcacgtggc MAX 878 887 - 7.98 ggtcacgtgg USF1 878 884 - 8.21 cacgtgg ESR1 878 895 + 6.88 ccacgtgaccctccccca Arnt 879 884 + 7.49 cacgtg Arnt 879 884 - 7.49 cacgtg USF1 879 885 + 7.85 cacgtga Mycn 879 884 + 7.57 cacgtg Mycn 879 884 - 7.57 cacgtg CFI-USP 880 889 - 6.12 agggtcacgt SP1 885 894 - 7.76 gggggagggt Klf4 886 895 - 6.23 tgggggaggg ZNF42_1-4 889 894 - 6.49 ggggga TEAD 892 903 - 11 cacattcctggg CREB1 900 911 + 10.1 tgtggtgacgtc HLF 903 914 + 8.34 ggtgacgtcatc HLF 903 914 - 6.38 gatgacgtcacc bZIP911 903 914 + 6.02 ggtgacgtcatc bZIP911 903 914 - 8.77 gatgacgtcacc bZIP910 904 910 + 7.58 gtgacgt CREB1 906 917 - 8.58 tccgatgacgtc bZIP910 907 913 - 9.09 atgacgt TCF11-MafG 909 914 - 6.94 gatgac SP1 916 925 + 6.66 gaggcgtggt ZNF42_1-4 928 933 - 7.85 tgggga AGL3 931 940 + 9.3 ccaaaattag AGL3 931 940 - 6.27 ctaattttgg Agamous 931 941 + 6.68 ccaaaattagg Prrx2 935 939 + 6.88 aatta SPIB 947 953 + 6.4 agaggaa Hunchback 950 959 + 6.21 ggaaaaaaaa Hunchback 951 960 + 7.26 gaaaaaaaaa Dof2 959 964 + 6.07 aaagcc HAND1-TCF3 960 969 - 6.46 tttctggctt Foxd3 968 979 + 6.93 aaaagttttctt Broad-complex_4 969 979 - 6.34 aagaaaacttt Broad-complex_1 970 983 - 6.77 agaaaagaaaactt Broad-complex_3 971 981 - 6.88 aaaagaaaact Evi1 971 984 - 7.36 cagaaaagaaaact IRF1 971 982 - 7.59 gaaaagaaaact Klf4 972 981 - 6.22 aaaagaaaac IRF1 972 983 - 6.11 agaaaagaaaac SQUA 972 985 - 7.82 ccagaaaagaaaac ID1 972 983 + 7.98 gttttcttttct Hunchback 973 982 - 7.54 gaaaagaaaa ID1 973 984 + 10.4 ttttcttttctg Broad-complex_4 974 984 - 8.69 cagaaaagaaa ID1 974 985 + 6.01 tttcttttctgg Dof2 975 980 - 6.61 aaagaa Hunchback 975 984 - 7.81 cagaaaagaa MNB1A 976 980 - 6.27 aaaga RUSH1-alfa 977 984 + 6.41 cttttctg >NM_001554 (1000 bp) CLUSTER 1 Location: 41 to 968 Score: 6.75 TBP: 2.23 RREB1: 2.22 HAND1-TCF3: 1.05 FOXI1: 0.74 TEAD: 0.711 Foxd3: 0.629 SPIB: 0.574 HMG-IY: 0.57 Foxa2: 0.528 Staf: 0.513 Hunchback: 0.45 HMG-1: 0.427 deltaEF1: 0.426 Broad-complex_1: 0.408 Foxq1: 0.399 SP1: 0.383 NR2F1: 0.38 Klf4: 0.37 ZNF42_1-4: 0.296 Broad-complex_3: 0.279 SPI1: 0.274 PBF: 0.268 MNB1A: 0.265 Fos: 0.254 Dof2: 0.251 NFKB1: 0.248 Broad-complex_4: 0.232 NR3C1: 0.226 CREB1: 0.212 RELA: 0.207 ABI4: 0.202 ZNF42_5-13: 0.195 MA0021: 0.192 Pax4: 0.192 bZIP910: 0.184 Arnt-Ahr: 0.181 Prrx2: 0.173 FOXD1: 0.163 c-ETS: 0.159 HNF4: 0.155 ID1: 0.155 Bapx1: 0.15 Dorsal_2: 0.145 Pax6: 0.139 Macho-1: 0.138 Pax2: 0.134 Dorsal_1: 0.134 SRY: 0.133 SOX9: 0.133 MafB: 0.127 NF-kappaB: 0.12 GAMYB: 0.118 E74A: 0.118 MYB.ph3: 0.117 REL: 0.117 RUSH1-alfa: 0.116 TFAP2A: 0.116 TCF1: 0.102 En1: 0.102 cEBP: 0.101 Nkx2-5: 0.0981 YY1: 0.0957 SU_h: 0.0956 ELK1: 0.0872 HLF: 0.084 Pax5: 0.0759 GABPA: 0.0752 Gata1: 0.0738 Agamous: 0.0735 Ubx: 0.073 RUNX1: 0.0672 SQUA: 0.0664 Broad-complex_2: 0.0659 ESR1: 0.0657 GATA3: 0.064 Pbx: 0.0638 FOXL1: 0.0628 ARR10: 0.0627 Hox11-CTF1: 0.0595 TCF11-MafG: 0.0545 GATA2: 0.0495 FOXC1: 0.0489 E2F1: 0.0487 Chop-cEBP: 0.0461 FOXF2: 0.0431 CFI-USP: 0.0429 Spz1: 0.0413 Athb-1: 0.0373 Myb: 0.0372 Sox17: 0.0369 IRF1: 0.0365 Snail: 0.0349 Sox5: 0.0344 AGL3: 0.0312 Gfi: 0.029 Myf: 0.0268 Arnt: 0.0251 Mycn: 0.0214 bZIP911: 0.0171 RORA: 0.0142 MAX: 0.0127 USF1: 0.0117 NFIL3: 0.00987 Evi1: 0.00862 IRF2: 0.00828 MYC-MAX: 0.00753 ELK4: 0.00672 TAL1-TCF3: 0.0054 RXR-VDR: 0.00537 Ar: 0.00532 NHLH1: 0.00492 NF-Y: 0.00361 CF2-II: 0.00351 RORA1: 0.00264 TP53: 0.00242 Roaz: 0.00199 PPARG: 0.00198 SRF: 0.00175 ATHB5: 0.00167 T: 0.00164 MEF2A: 0.00147 PPARG-RXRA: 0.000133 NR1H2-RXR: 1.01e-05 GGAGAACTCCCCGCGTTCGTTTCCTCTcggacttccaacccaggcagtgggctggaactAAAGTGGGAACCTCCAAAAACAAACAAGTACAACatacCCAAAAGAGGGAAGGgctggaggagtgggggagacctctgcCTGGGAATTTGCCAGACGATGGGCAAGTTTCCCCCCGCCCCACCCCCCCCCCGCCTtTTCATTCATAAATGCCACTGtGGGTATTAATTTGCaattcacTGAACTTTGCTAATAAACATCAtgccAAAGCTTTGGGACTTGTTCCGAACACGCCtcttTGAAGTCCACaaataTTCCTGACTCAGagacacactcctcttccccgttctactctttcaacagataacttgcctctcaccttcgcTGTAAAAAAGCAAACAGCTcactgccTTCCCGGGTGAGGGCTTCAGTGGCtgcccggtcaactcgcatCACCAAACAAAACGACTTTTGTTCctccctctcaggtcctcccacccacccagtcCAGGCAAAGTTCTGAACTGGcccccctcgcccctcacgaccctccaactaccatcaccaccatcacgccccaaagaacccttcccaacataaGTCGTAATTTAAGGTGGAAAAAACGAACTGTTTTCTTGACGGGTCTGGGACacacacacacacacacacacacacacacacaccccccGAACTGTTTTCTTGACGGGTCTGGGAGACAGACacacacacagacacacacacacacacacacacacacacacacacacacacacacacacacacacaAAGGTGcaatggagccaggggaggcgcttggcagcagcccgcgccaaccAGCATTCCTGAGATGTTTGAGAATTCTGGAACGCGcagacagagccGACGTCACTGCAacacgCGGCGCCTCCgccggcCCGTATAAAAGGCGGGC NFKB1 41 51 - 7.04 gggagttctcc Staf 44 63 + 8.22 gaactccccgcgttcgtttc ZNF42_1-4 48 53 - 6.03 cgggga IRF1 53 64 - 6.23 ggaaacgaacgc GAMYB 55 64 - 6.87 ggaaacgaac E74A 60 66 - 6.14 gaggaaa c-ETS 60 65 + 6.97 tttcct SPIB 61 67 - 8.94 agaggaa MA0021 100 105 + 6.1 aaagtg SU_h 101 116 + 6.26 aagtgggaacctccaa Foxd3 117 128 - 8.27 acttgtttgttt FOXI1 117 128 - 9.24 acttgtttgttt Foxa2 117 128 - 7.96 acttgtttgttt HMG-1 125 133 - 7.05 gttgtactt Agamous 138 148 + 6.2 ccaaaagaggg Klf4 139 148 + 6.03 caaaagaggg Klf4 143 152 + 7.5 agagggaagg SPI1 146 151 + 6.36 gggaag Hox11-CTF1 179 192 - 6.03 tggcaaattcccag Hox11-CTF1 180 193 + 6.24 tgggaatttgccag NF-kappaB 181 190 + 6.86 gggaatttgc Pax4 181 210 - 7.03 ggaaacttgcccatcgtctggcaaattccc RELA 181 190 + 7.81 gggaatttgc HAND1-TCF3 187 196 - 8.25 cgtctggcaa ZNF42_5-13 195 204 + 6.02 cgatgggcaa NR2F1 197 210 - 6.49 ggaaacttgcccat Pax4 200 229 + 7.38 ggcaagtttccccccgccccaccccccccc Pax4 201 230 + 8.27 gcaagtttccccccgccccacccccccccc RREB1 209 228 + 6.33 ccccccgccccacccccccc RREB1 210 229 + 8.2 cccccgccccaccccccccc RREB1 211 230 + 11.5 ccccgccccacccccccccc RREB1 213 232 + 6.48 ccgccccaccccccccccgc RREB1 215 234 + 6.61 gccccaccccccccccgcct SP1 220 229 - 7.18 gggggggggt Pax6 236 249 + 6.42 ttcattcataaatg TBP 241 255 + 6.13 tcataaatgccactg FOXI1 257 268 + 6.51 gggtattaattt TCF1 257 270 + 6.81 gggtattaatttgc Prrx2 263 267 - 6.59 aatta NR2F1 278 291 + 8.86 tgaactttgctaat HNF4 278 290 - 6.77 ttagcaaagttca Broad-complex_4 288 298 + 6.29 taataaacatc FOXI1 288 299 - 8.01 tgatgtttatta Foxq1 289 299 - 9.09 tgatgtttatt FOXD1 290 297 + 6.58 ataaacat Dof2 304 309 + 6.54 aaagct MNB1A 304 308 + 6.52 aaagc PBF 304 308 + 6.48 aaagc Dof2 306 311 - 6.25 aaagct HMG-IY 307 322 - 8.11 gaacaagtcccaaagc MNB1A 307 311 - 6.08 aaagc PBF 307 311 - 6.03 aaagc SPI1 319 324 - 6.19 cggaac HMG-1 324 332 - 6.12 ggcgtgttc Dorsal_2 337 346 - 6.36 gtggacttca SPIB 352 358 - 6.13 tcaggaa Fos 355 362 + 6.4 ctgactca Fos 356 363 - 7.41 ctgagtca Dorsal_1 423 434 - 6.09 tgcttttttaca FOXD1 424 431 + 7.4 gtaaaaaa HMG-IY 424 439 + 7.69 gtaaaaaagcaaacag Foxd3 426 437 - 6.34 gtttgctttttt Dof2 429 434 + 6.94 aaagca MA0021 429 434 + 6.46 aaagca MNB1A 429 433 + 6.43 aaagc PBF 429 433 + 6.38 aaagc Foxa2 430 441 - 7.45 agctgtttgctt Pax6 449 462 + 6.23 ttcccgggtgaggg TFAP2A 455 463 - 6.44 gccctcacc Bapx1 464 472 + 6.24 ttcagtggc FOXI1 491 502 - 6.1 ttttgtttggtg Broad-complex_3 494 504 + 6.42 caaacaaaacg MA0021 504 509 - 6.58 aaagtc SOX9 506 514 - 7.09 gaacaaaag HNF4 546 558 + 6.21 caggcaaagttct NR3C1 548 565 + 7.33 ggcaaagttctgaactgg PBF 551 555 + 6.22 aaagt HMG-1 638 646 + 7.77 gtcgtaatt Prrx2 642 646 - 7.34 aatta HMG-IY 645 660 + 6.84 tttaaggtggaaaaaa deltaEF1 648 653 - 8.02 cacctt Foxd3 654 665 - 6.38 gttcgttttttc NR3C1 655 672 - 6.74 gaaaacagttcgtttttt Broad-complex_1 662 675 - 6.82 caagaaaacagttc MYB.ph3 662 670 + 7.54 gaactgttt Foxd3 663 674 + 8.77 aactgttttctt Foxa2 663 674 + 8.54 aactgttttctt Broad-complex_4 664 674 - 6.69 aagaaaacagt Pax5 664 683 - 6.68 agacccgtcaagaaaacagt SRY 664 672 - 6.87 gaaaacagt FOXD1 665 672 - 6.23 gaaaacag Klf4 665 674 - 6.1 aagaaaacag Broad-complex_3 666 676 - 7.56 tcaagaaaaca Hunchback 666 675 - 8.31 caagaaaaca Pbx 668 679 - 6.63 ccgtcaagaaaa CREB1 669 680 + 6.96 tttcttgacggg Hunchback 670 679 - 6.62 ccgtcaagaa SP1 678 687 + 7.62 gggtctggga HAND1-TCF3 679 688 + 8.42 ggtctgggac Broad-complex_1 726 739 - 8.05 caagaaaacagttc MYB.ph3 726 734 + 8.14 gaactgttt MYB.ph3 726 734 - 6.32 aaacagttc Foxq1 727 737 + 6.29 aactgttttct Foxd3 727 738 + 9.93 aactgttttctt Foxa2 727 738 + 9.71 aactgttttctt Broad-complex_4 728 738 - 8.1 aagaaaacagt Pax5 728 747 - 8.24 agacccgtcaagaaaacagt FOXF2 728 741 - 6.99 gtcaagaaaacagt SRY 728 736 - 7.87 gaaaacagt Sox5 728 734 - 6.32 aaacagt FOXD1 729 736 - 7.48 gaaaacag Klf4 729 738 - 7.76 aagaaaacag Broad-complex_3 730 740 - 8.9 tcaagaaaaca Dof2 730 735 - 6.1 aaaaca Evi1 730 743 - 6.74 ccgtcaagaaaaca Hunchback 730 739 - 9.79 caagaaaaca Staf 730 749 - 6.56 ccagacccgtcaagaaaaca HMG-1 731 739 + 7.02 gttttcttg Hunchback 731 740 - 6.82 tcaagaaaac RUSH1-alfa 731 738 + 7.01 gttttctt Pbx 732 743 - 7.6 ccgtcaagaaaa CREB1 733 744 + 7.55 tttcttgacggg E74A 733 739 - 6.01 caagaaa Hunchback 734 743 - 7.16 ccgtcaagaa ESR1 741 758 - 6.26 gtctgtctcccagacccg SP1 742 751 + 7.1 gggtctggga HAND1-TCF3 743 752 + 8.66 ggtctgggag ZNF42_5-13 744 753 + 6.14 gtctgggaga deltaEF1 824 829 - 7.15 cacctt TEAD 873 884 + 9.42 agcattcctgag E74A 876 882 - 6.94 caggaat c-ETS 876 881 + 6.15 attcct SPIB 877 883 - 8.25 tcaggaa Pax5 880 899 - 6.35 agaattctcaaacatctcag RUSH1-alfa 882 889 - 6.29 aacatctc ARR10 883 890 + 6.02 agatgttt Broad-complex_1 885 898 + 7.52 atgtttgagaattc HMG-IY 885 900 - 6.71 cagaattctcaaacat Broad-complex_1 886 899 - 8.58 agaattctcaaaca HLF 886 897 + 6.91 tgtttgagaatt SU_h 887 902 + 6.19 gtttgagaattctgga Staf 888 907 - 8.82 cgcgttccagaattctcaaa cEBP 888 899 + 6.55 tttgagaattct HAND1-TCF3 895 904 + 7.18 attctggaac CREB1 919 930 - 7.43 tgcagtgacgtc bZIP910 920 926 - 7.63 gtgacgt Pax2 921 928 + 6.12 cgtcactg ABI4 936 945 + 6.93 cggcgcctcc Hunchback 952 961 + 6.02 ccgtataaaa TBP 954 968 + 11 gtataaaaggcgggc >NM_006434 (1000 bp) CLUSTER 1 Location: 710 to 879 Score: 6.89 SRF: 2.08 IRF1: 1.83 MYC-MAX: 0.557 RUNX1: 0.532 Snail: 0.316 MAX: 0.292 USF1: 0.14 Mycn: 0.117 deltaEF1: 0.105 Arnt: 0.0899 Pbx: 0.0863 CFI-USP: 0.0834 RORA: 0.0824 Sox17: 0.0806 HNF4: 0.0767 AGL3: 0.0589 MafB: 0.0546 c-ETS: 0.0423 MA0021: 0.0378 IRF2: 0.0371 GATA2: 0.037 Nkx2-5: 0.0343 HAND1-TCF3: 0.0337 ELK4: 0.0314 GABPA: 0.0306 En1: 0.0298 Broad-complex_2: 0.0273 Gata1: 0.0257 Agamous: 0.0257 TFAP2A: 0.0248 Ubx: 0.0243 SRY: 0.0239 ESR1: 0.0231 RREB1: 0.0226 Athb-1: 0.0223 TBP: 0.0198 Bapx1: 0.0194 RORA1: 0.0174 Macho-1: 0.0172 TCF11-MafG: 0.0167 Pax2: 0.0161 NR2F1: 0.0161 cEBP: 0.0153 Arnt-Ahr: 0.0148 Fos: 0.0147 Dof2: 0.0145 PBF: 0.014 Sox5: 0.014 SU_h: 0.0135 SQUA: 0.0133 Broad-complex_4: 0.0125 bZIP910: 0.0124 ATHB5: 0.012 ELK1: 0.0119 MYB.ph3: 0.0113 SPI1: 0.0111 FOXL1: 0.011 GAMYB: 0.0108 ZNF42_1-4: 0.0104 RUSH1-alfa: 0.0102 CREB1: 0.00976 GATA3: 0.0095 E74A: 0.009 HMG-1: 0.00894 Broad-complex_3: 0.00874 MNB1A: 0.00874 PPARG: 0.00862 TCF1: 0.00862 SP1: 0.00808 YY1: 0.0076 Klf4: 0.00737 Staf: 0.0072 FOXC1: 0.00705 ID1: 0.00688 Hunchback: 0.00597 SOX9: 0.00586 Chop-cEBP: 0.00578 Dorsal_2: 0.00543 Gfi: 0.00517 ARR10: 0.00516 Spz1: 0.00495 Myb: 0.00483 MEF2A: 0.00482 E2F1: 0.00471 ZNF42_5-13: 0.00455 NFIL3: 0.00421 REL: 0.00403 TEAD: 0.0039 SPIB: 0.00369 HLF: 0.0036 Foxq1: 0.00342 FOXI1: 0.00332 FOXD1: 0.0031 Evi1: 0.00305 Broad-complex_1: 0.00276 Dorsal_1: 0.00253 Prrx2: 0.00253 bZIP911: 0.00248 Pax4: 0.00224 HMG-IY: 0.00202 RELA: 0.00195 Foxd3: 0.00188 Pax5: 0.00166 NF-kappaB: 0.00149 Myf: 0.00147 Foxa2: 0.000916 RXR-VDR: 0.000836 TAL1-TCF3: 0.000779 Pax6: 0.000774 CF2-II: 0.000613 NFKB1: 0.000596 PPARG-RXRA: 0.000596 NR3C1: 0.000476 FOXF2: 0.000419 ABI4: 0.000402 NF-Y: 0.000265 Hox11-CTF1: 0.000233 Ar: 0.000194 T: 0.000151 NHLH1: 0.000122 NR1H2-RXR: 4.34e-05 Roaz: 6.98e-06 TP53: 5.56e-06 AACCACGTGCACTCGTgtagcttgaggtttttaatagaatgtttgaaagggatgtcggataacatcaGCACCAAATATGGGCAACAAAACTGAAACCAGTGAgGTTGAGTGATGTGCCCAAGGTCACAATAATatgtGGGTGACCACAAACCAGAAGCCtggcCAGGTGa MAX 710 719 + 10.1 aaccacgtgc MYC-MAX 710 720 + 8.54 aaccacgtgca MYC-MAX 711 721 - 10.7 gtgcacgtggt USF1 712 718 - 9.35 cacgtgg Arnt 713 718 + 8.32 cacgtg Arnt 713 718 - 8.32 cacgtg USF1 713 719 + 7.58 cacgtgc Mycn 713 718 + 8.4 cacgtg Mycn 713 718 - 8.4 cacgtg Chop-cEBP 714 725 + 6.19 acgtgcactcgt E2F1 777 784 - 6.08 tttggtgc SRF 778 789 + 7.4 caccaaatatgg Agamous 779 789 - 8.11 ccatatttggt AGL3 780 789 + 9.16 ccaaatatgg AGL3 780 789 - 8.31 ccatatttgg Agamous 780 790 + 7.79 ccaaatatggg SQUA 780 793 + 7.71 ccaaatatgggcaa SRF 780 791 - 12.2 gcccatatttgg IRF2 794 811 + 7.47 caaaactgaaaccagtga IRF1 795 806 + 10.8 aaaactgaaacc Pbx 813 824 - 6.49 acatcactcaac HNF4 823 835 + 6.65 gtgcccaaggtca RORA 826 835 + 6.69 cccaaggtca Sox17 834 842 - 6.75 attattgtg CFI-USP 847 856 - 7.21 gtggtcaccc RUNX1 851 859 - 9 tttgtggtc HAND1-TCF3 857 866 - 6.15 cttctggttt GABPA 859 868 + 6.01 accagaagcc ELK4 859 867 + 6.12 accagaagc Snail 873 878 + 8.17 caggtg deltaEF1 873 878 - 7.09 cacctg >NM_153449 (1000 bp) CLUSTER 1 Location: 163 to 720 Score: 5.23 MYB.ph3: 1.74 Foxd3: 1.68 ESR1: 1.05 Chop-cEBP: 0.72 MEF2A: 0.624 FOXI1: 0.528 Agamous: 0.428 Spz1: 0.414 HMG-IY: 0.287 Broad-complex_2: 0.276 TFAP2A: 0.261 AGL3: 0.223 HMG-1: 0.218 REL: 0.215 ARR10: 0.211 Snail: 0.204 ABI4: 0.198 MNB1A: 0.181 Pax4: 0.171 HLF: 0.17 Myb: 0.161 MA0021: 0.152 SP1: 0.148 Staf: 0.14 GATA3: 0.139 Macho-1: 0.137 Dof2: 0.133 PBF: 0.131 Broad-complex_1: 0.127 IRF2: 0.126 Foxa2: 0.125 GATA2: 0.121 En1: 0.111 Broad-complex_4: 0.109 Dorsal_2: 0.108 RUSH1-alfa: 0.107 NF-kappaB: 0.104 ELK1: 0.0979 Prrx2: 0.0979 deltaEF1: 0.0958 Dorsal_1: 0.0923 NR2F1: 0.0905 Fos: 0.0899 c-ETS: 0.089 Gata1: 0.0888 ZNF42_5-13: 0.0874 Hunchback: 0.0852 ZNF42_1-4: 0.0847 Ubx: 0.0823 NR3C1: 0.0779 NHLH1: 0.0778 SQUA: 0.0759 RORA: 0.0702 E2F1: 0.0672 FOXL1: 0.064 MafB: 0.0582 YY1: 0.0577 SPI1: 0.0569 Gfi: 0.0565 ID1: 0.0522 Pax2: 0.0516 CFI-USP: 0.0516 cEBP: 0.0497 FOXC1: 0.0488 Nkx2-5: 0.0484 Athb-1: 0.048 RUNX1: 0.0476 HNF4: 0.0462 RELA: 0.0422 SRY: 0.0414 Broad-complex_3: 0.0403 GAMYB: 0.0403 Klf4: 0.0402 Bapx1: 0.0384 E74A: 0.0381 NFKB1: 0.0376 SOX9: 0.0374 Arnt-Ahr: 0.0369 Myf: 0.0353 Pax5: 0.0333 HAND1-TCF3: 0.0318 Roaz: 0.0304 TCF11-MafG: 0.0302 SPIB: 0.0281 CF2-II: 0.0279 GABPA: 0.0247 TCF1: 0.0227 Sox5: 0.0224 IRF1: 0.022 Evi1: 0.0219 FOXD1: 0.0213 Foxq1: 0.0212 T: 0.0176 TEAD: 0.0164 Arnt: 0.016 Mycn: 0.0157 Sox17: 0.0149 SU_h: 0.0145 ELK4: 0.014 MYC-MAX: 0.013 RORA1: 0.0121 MAX: 0.012 TBP: 0.00844 USF1: 0.00789 RXR-VDR: 0.00602 bZIP910: 0.00586 CREB1: 0.00557 Pbx: 0.00535 FOXF2: 0.00421 PPARG: 0.0034 NFIL3: 0.0034 PPARG-RXRA: 0.00339 Pax6: 0.00315 Ar: 0.00267 ATHB5: 0.00267 NF-Y: 0.00219 RREB1: 0.00217 NR1H2-RXR: 0.00194 TAL1-TCF3: 0.00152 Hox11-CTF1: 0.0015 TP53: 0.000408 SRF: 0.000271 bZIP911: 0.000173 GAGAACGACCGCGGGGCTTTTCatCCAAAAAGAGCtcctgagtctgaaaTAACTGTTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTtttGAGACGGAATcttgaGCTGTTACCCAGGCTGGAGTGCAATGGCGGAGTTCAGCTCACTGTAACCTCCGCCTCCtgggttcaagcgattctCCTGTCTCAGCCTCCCAAGCAGTTGGGActatagGAGCGCACCGccaagcccCCTAATTTTGTTATTTTTAGTAAAGACTgGGTTTCGCCATGttggccaggctggtctcGAACCCCTGACCTCAAGttatccgctctcctcggcctcCAAAAGTGCTAGGATTACAGGTGTGAGCCAccgtgcgcggcccgAAATAACTCTTTaCAGGATCTcgcccTGGGCCTTCCcagcccagccggcccgcccgcggggatagcccgggcaCTATCTccctgctgcaggcggtGAGGGGCTCGGGTATCTTTGAAAATAGATACGTTCACACCCTCCTAACGGCggcgccaagggtggtgggtcCCAAAACTGTTT HMG-1 163 171 - 7.46 gtcgttctc TFAP2A 171 179 - 7.41 gccccgcgg NF-kappaB 175 184 + 6.19 ggggcttttc REL 175 184 + 7.02 ggggcttttc AGL3 187 196 + 8.18 ccaaaaagag Agamous 187 197 + 8.71 ccaaaaagagc Hunchback 187 196 + 6.55 ccaaaaagag MEF2A 187 196 - 6.2 ctctttttgg MYB.ph3 212 220 + 7.76 taactgttt Foxd3 218 229 + 7.26 ttttgtttgttt FOXI1 218 229 + 7.16 ttttgtttgttt Foxd3 222 233 + 8.72 gtttgtttgttt FOXI1 222 233 + 7.67 gtttgtttgttt Foxd3 226 237 + 8.62 gtttgtttgttt FOXI1 226 237 + 7.57 gtttgtttgttt Foxd3 230 241 + 8.46 gtttgtttgttt FOXI1 230 241 + 7.4 gtttgtttgttt Foxd3 234 245 + 8.35 gtttgtttgttt FOXI1 234 245 + 7.3 gtttgtttgttt Foxd3 238 249 + 8.29 gtttgtttgttt FOXI1 238 249 + 7.24 gtttgtttgttt Foxd3 242 253 + 8.38 gtttgtttgttt FOXI1 242 253 + 7.32 gtttgtttgttt Foxd3 246 257 + 8.34 gtttgtttgttt FOXI1 246 257 + 7.29 gtttgtttgttt ELK1 261 270 + 6.21 gagacggaat Spz1 276 286 - 8.05 tgggtaacagc Staf 278 297 + 6.78 tgttacccaggctggagtgc Chop-cEBP 292 303 + 9.03 gagtgcaatggc NR2F1 298 311 - 6.06 tgaactccgccatt ESR1 309 326 + 9.43 tcagctcactgtaacctc ESR1 310 327 - 6.25 ggaggttacagtgagctg ZNF42_5-13 324 333 - 6.51 ggaggcggag Staf 351 370 + 6.6 cctgtctcagcctcccaagc NHLH1 367 378 - 6.52 tcccaactgctt Myb 368 375 + 7.24 agcagttg ABI4 385 394 - 6.95 cggtgcgctc Agamous 403 413 + 6.45 cctaattttgt Prrx2 405 409 - 6.97 aatta Broad-complex_1 407 420 - 7.97 aaaaataacaaaat HMG-IY 407 422 - 9.33 ctaaaaataacaaaat Foxd3 408 419 + 7.52 ttttgttatttt SQUA 409 422 - 7.08 ctaaaaataacaaa SRY 409 417 - 6.09 aataacaaa MEF2A 413 422 + 10.1 ttatttttag SQUA 413 426 + 7.03 ttatttttagtaaa Hunchback 415 424 - 6.47 tactaaaaat Broad-complex_4 420 430 + 6.77 tagtaaagact MNB1A 424 428 + 6.07 aaaga HLF 432 443 + 7.15 ggtttcgccatg Macho-1 461 469 - 6 caggggttc RORA 468 477 - 6.45 cttgaggtca IRF2 499 516 + 7.64 caaaagtgctaggattac MA0021 501 506 + 7.2 aaagtg MNB1A 501 505 + 6.03 aaagt PBF 501 505 + 6.45 aaagt Chop-cEBP 509 520 - 6.2 acctgtaatcct Spz1 509 519 + 6.79 aggattacagg Snail 516 521 + 7.94 caggtg deltaEF1 516 521 - 6.86 cacctg Fos 521 528 + 6.33 gtgagcca Broad-complex_2 543 550 - 6.37 agttattt MYB.ph3 546 554 + 6.99 taactcttt ARR10 556 563 - 7.11 agatcctg REL 569 578 + 6.12 tgggccttcc GATA3 616 621 - 6.81 agatag Pax4 638 667 - 6.64 tatctattttcaaagatacccgagcccctc NR2F1 649 662 + 6.02 gtatctttgaaaat Pax4 649 678 + 6.18 gtatctttgaaaatagatacgttcacaccc Broad-complex_1 651 664 + 7.75 atctttgaaaatag Dof2 651 656 - 6.16 aaagat MNB1A 652 656 - 6.06 aaaga Broad-complex_4 655 665 + 7.02 ttgaaaataga HMG-IY 655 670 + 7.36 ttgaaaatagatacgt MEF2A 655 664 - 7.33 ctattttcaa SQUA 655 668 + 6.95 ttgaaaatagatac FOXL1 656 663 + 6.26 tgaaaata ID1 656 667 - 6.79 tatctattttca Broad-complex_1 658 671 + 6.24 aaaatagatacgtt Pax4 658 687 + 7.94 aaaatagatacgttcacaccctcctaacgg NR3C1 658 675 + 6.3 aaaatagatacgttcaca Broad-complex_2 659 666 - 9.06 atctattt CF2-II 659 668 - 6.59 gtatctattt FOXI1 659 670 - 7.5 acgtatctattt Foxa2 659 670 - 7.88 acgtatctattt MYB.ph3 659 667 - 7.26 tatctattt Pax4 659 688 + 6.22 aaatagatacgttcacaccctcctaacggc FOXL1 660 667 + 6.98 aatagata ARR10 663 670 + 7.27 agatacgt Agamous 709 719 + 7.25 ccaaaactgtt MYB.ph3 712 720 + 9.8 aaactgttt MYB.ph3 712 720 - 9.28 aaacagttt >NM_030754 (1000 bp) CLUSTER 1 Location: 875 to 964 Score: 6.64 MEF2A: 2.81 NF-kappaB: 0.698 ZNF42_5-13: 0.529 RELA: 0.377 REL: 0.106 Dof2: 0.0856 MNB1A: 0.08 PBF: 0.0768 SPIB: 0.0607 SPI1: 0.0482 ZNF42_1-4: 0.0464 AGL3: 0.0437 NFKB1: 0.0342 Klf4: 0.0325 RUSH1-alfa: 0.0313 TCF11-MafG: 0.0223 c-ETS: 0.0211 ID1: 0.0203 TAL1-TCF3: 0.0183 HMG-1: 0.0163 Dorsal_2: 0.0145 Hunchback: 0.0134 Pax5: 0.0125 Dorsal_1: 0.0124 SP1: 0.011 HMG-IY: 0.0105 RUNX1: 0.00979 MA0021: 0.00919 En1: 0.00889 deltaEF1: 0.00865 ELK1: 0.00829 E74A: 0.00817 Gata1: 0.00809 Pax2: 0.00804 Macho-1: 0.00785 GATA2: 0.00757 SU_h: 0.00679 ARR10: 0.00616 GABPA: 0.0059 Spz1: 0.00448 SOX9: 0.00436 Pbx: 0.00428 Staf: 0.00423 bZIP910: 0.00399 Snail: 0.00396 Broad-complex_4: 0.0039 YY1: 0.0037 HNF4: 0.00361 Myf: 0.00345 RORA: 0.0031 NR3C1: 0.00277 Foxa2: 0.00274 FOXL1: 0.00267 TFAP2A: 0.00259 Broad-complex_3: 0.00255 Broad-complex_2: 0.00252 HAND1-TCF3: 0.00247 Agamous: 0.0022 ESR1: 0.00215 ELK4: 0.00205 MafB: 0.00184 NR2F1: 0.00175 Ubx: 0.00174 FOXC1: 0.00149 MAX: 0.00135 GATA3: 0.00134 Broad-complex_1: 0.00125 cEBP: 0.00119 Evi1: 0.0011 Pax4: 0.0011 GAMYB: 0.00107 E2F1: 0.00104 Nkx2-5: 0.00104 Bapx1: 0.00103 Mycn: 0.000864 TBP: 0.000835 SRY: 0.000753 CF2-II: 0.000748 Arnt-Ahr: 0.000716 TEAD: 0.000673 CFI-USP: 0.000658 CREB1: 0.000652 Chop-cEBP: 0.000627 USF1: 0.000621 NHLH1: 0.000603 Arnt: 0.000563 Gfi: 0.000515 RREB1: 0.000506 FOXD1: 0.000458 Pax6: 0.000449 Myb: 0.000421 SQUA: 0.000405 Prrx2: 0.00036 Sox5: 0.000326 Sox17: 0.000292 MYC-MAX: 0.000289 Fos: 0.000288 IRF1: 0.000208 Athb-1: 0.000198 HLF: 0.000189 ABI4: 0.000182 MYB.ph3: 0.000167 IRF2: 0.000103 TCF1: 8.44e-05 FOXF2: 8.2e-05 Foxq1: 5.14e-05 Foxd3: 4.59e-05 Hox11-CTF1: 4.41e-05 RXR-VDR: 4.22e-05 TP53: 3.82e-05 T: 3.72e-05 Ar: 2.24e-05 Roaz: 2.2e-05 SRF: 2.11e-05 FOXI1: 1.88e-05 NF-Y: 1.75e-05 bZIP911: 1.68e-05 NFIL3: 1.33e-05 ATHB5: 5.66e-06 RORA1: 1.44e-06 PPARG: 9.86e-07 PPARG-RXRA: 5.69e-08 NR1H2-RXR: 3.84e-08 GTAGGGGAAAtgacctgcaGGGACTTTCCCCAgggaccacatccAGCTTTtcttccctcccaagagaccagcaaggctcaCTATAAATAG ZNF42_5-13 875 884 + 8.87 gtaggggaaa ZNF42_1-4 877 882 + 6.43 agggga SPIB 877 883 + 6.98 aggggaa Dorsal_2 894 903 + 6.98 gggactttcc NF-kappaB 894 903 + 11.3 gggactttcc NF-kappaB 894 903 - 6.13 ggaaagtccc REL 894 903 + 9.51 gggactttcc NFKB1 894 904 + 7.82 gggactttccc NFKB1 894 904 - 7.61 gggaaagtccc RELA 894 903 + 10.8 gggactttcc NF-kappaB 895 904 - 7.38 gggaaagtcc MA0021 896 901 - 6.52 aaagtc PBF 897 901 - 6.05 aaagt ZNF42_1-4 901 906 - 6.21 tgggga Dof2 919 924 - 6.92 aaagct MNB1A 920 924 - 6.86 aaagc PBF 920 924 - 6.82 aaagc AGL3 955 964 + 9.56 ctataaatag AGL3 955 964 - 8.73 ctatttatag MEF2A 955 964 + 9.23 ctataaatag MEF2A 955 964 - 13 ctatttatag FOXL1 956 963 + 6.33 tataaata >NM_016441 (1000 bp) CLUSTER 1 Location: 757 to 787 Score: 6.98 HMG-IY: 0.482 Pax4: 0.3 Broad-complex_1: 0.171 ID1: 0.0762 ZNF42_5-13: 0.0673 Hunchback: 0.04 Klf4: 0.0239 Broad-complex_3: 0.0168 MYB.ph3: 0.0145 Broad-complex_4: 0.0136 IRF2: 0.00612 PBF: 0.00557 ZNF42_1-4: 0.00546 Foxd3: 0.00523 MNB1A: 0.00507 Dof2: 0.0037 SP1: 0.00368 IRF1: 0.00362 Foxa2: 0.00271 Evi1: 0.00227 Dorsal_1: 0.00211 c-ETS: 0.00198 Macho-1: 0.00168 Broad-complex_2: 0.00167 RUSH1-alfa: 0.00145 SPI1: 0.00129 NR3C1: 0.00102 MA0021: 0.000821 HNF4: 0.000787 YY1: 0.000776 SQUA: 0.000773 E74A: 0.000761 HMG-1: 0.000754 GABPA: 0.000673 Gata1: 0.000612 E2F1: 0.000601 FOXI1: 0.000568 SPIB: 0.000432 SRY: 0.000409 ELK1: 0.000403 Foxq1: 0.000394 FOXD1: 0.000352 SU_h: 0.000351 NR2F1: 0.000304 Nkx2-5: 0.000296 En1: 0.000272 TCF1: 0.000264 GATA3: 0.000248 Spz1: 0.000225 deltaEF1: 0.000205 ABI4: 0.000205 REL: 0.000194 FOXC1: 0.000192 FOXL1: 0.000183 Pax2: 0.000183 FOXF2: 0.00017 GAMYB: 0.000144 Pax5: 0.000141 TBP: 0.000138 Bapx1: 0.000125 Myb: 0.000122 Ubx: 0.000121 TEAD: 0.00012 GATA2: 0.000112 Sox5: 0.000108 SOX9: 0.000106 Athb-1: 0.000104 cEBP: 9.53e-05 Dorsal_2: 9.47e-05 Sox17: 8.91e-05 Staf: 7.69e-05 MafB: 6.14e-05 ARR10: 5.3e-05 Snail: 4.8e-05 Gfi: 2.69e-05 Fos: 2.68e-05 Arnt-Ahr: 2.33e-05 HAND1-TCF3: 2.2e-05 Arnt: 1.67e-05 TCF11-MafG: 1.06e-05 Prrx2: 9.67e-06 CFI-USP: 6.68e-06 RXR-VDR: 6.51e-06 RORA: 6.26e-06 Myf: 5.75e-06 Agamous: 5.68e-06 TFAP2A: 5.3e-06 MAX: 5.13e-06 HLF: 5.05e-06 Pbx: 4.99e-06 RUNX1: 3.53e-06 Chop-cEBP: 3.28e-06 Mycn: 3.24e-06 PPARG-RXRA: 2.46e-06 AGL3: 2.14e-06 Hox11-CTF1: 2.11e-06 NF-kappaB: 2.09e-06 CREB1: 1.9e-06 NFIL3: 1.67e-06 RELA: 1.6e-06 MYC-MAX: 1.45e-06 ELK4: 1.23e-06 USF1: 1.17e-06 Pax6: 9.56e-07 ESR1: 7.98e-07 TAL1-TCF3: 5.74e-07 CF2-II: 5.73e-07 ATHB5: 4.72e-07 MEF2A: 4.62e-07 bZIP910: 3.93e-07 NFKB1: 1.64e-07 NF-Y: 1.12e-07 T: 1.06e-07 PPARG: 6.76e-08 Ar: 6.58e-08 SRF: 4.55e-08 RORA1: 3.71e-08 bZIP911: 3.46e-08 NHLH1: 3.32e-08 RREB1: 1.69e-08 Roaz: 5.13e-09 NR1H2-RXR: 1.66e-09 TP53: 4.82e-10 GAAACTTTTTTCTTTTTTCCCCCTCCCTCCC Broad-complex_3 757 767 + 8.15 gaaactttttt Broad-complex_4 757 767 - 6.36 aaaaaagtttc NR2F1 757 770 + 7.24 gaaacttttttctt Foxd3 757 768 + 7.1 gaaacttttttc HMG-IY 757 772 - 6.79 aaaagaaaaaagtttc Pax4 757 786 + 13.5 gaaacttttttcttttttccccctccctcc HNF4 757 769 - 8.01 agaaaaaagtttc Broad-complex_1 758 771 - 9.12 aaagaaaaaagttt Broad-complex_3 758 768 - 6.53 gaaaaaagttt Broad-complex_4 758 768 - 7.24 gaaaaaagttt Foxd3 758 769 + 8.08 aaacttttttct HMG-IY 758 773 - 7.57 aaaaagaaaaaagttt IRF2 758 775 - 11.3 gaaaaaagaaaaaagttt MYB.ph3 758 766 + 10 aaacttttt MYB.ph3 758 766 - 9.13 aaaaagttt Pax4 758 787 + 14.4 aaacttttttcttttttccccctccctccc NR3C1 758 775 - 9.43 gaaaaaagaaaaaagttt Broad-complex_1 759 772 - 11.4 aaaagaaaaaagtt Broad-complex_2 759 766 + 7.43 aacttttt Dof2 759 764 - 7.14 aaagtt Foxd3 759 770 + 8.91 aacttttttctt HMG-IY 759 774 - 9.08 aaaaaagaaaaaagtt Foxa2 759 770 + 9.07 aacttttttctt Hunchback 759 768 - 6.61 gaaaaaagtt Broad-complex_1 760 773 - 8.75 aaaaagaaaaaagt Broad-complex_4 760 770 - 8.48 aagaaaaaagt Pax5 760 779 - 6.4 gggggaaaaaagaaaaaagt FOXF2 760 773 - 6.58 aaaaagaaaaaagt Klf4 760 769 - 6.45 agaaaaaagt Foxq1 760 770 + 6.31 acttttttctt Foxd3 760 771 + 7.33 acttttttcttt FOXI1 760 771 + 7.89 acttttttcttt HMG-IY 760 775 - 15.2 gaaaaaagaaaaaagt Foxa2 760 771 + 8.35 acttttttcttt MNB1A 760 764 - 7.27 aaagt PBF 760 764 - 7.69 aaagt ID1 760 771 + 7.23 acttttttcttt Broad-complex_1 761 774 - 14.2 aaaaaagaaaaaag Broad-complex_3 761 771 - 6.44 aaagaaaaaag Broad-complex_4 761 771 - 7.52 aaagaaaaaag FOXF2 761 774 - 7.14 aaaaaagaaaaaag Klf4 761 770 - 10.7 aagaaaaaag Foxd3 761 772 + 7.16 cttttttctttt HMG-1 761 769 + 6.22 cttttttct HMG-IY 761 776 - 13.3 ggaaaaaagaaaaaag Hunchback 761 770 - 9.48 aagaaaaaag IRF1 761 772 - 7.96 aaaagaaaaaag SQUA 761 774 - 7 aaaaaagaaaaaag RUSH1-alfa 761 768 + 6.38 cttttttc ID1 761 772 + 6.73 cttttttctttt Broad-complex_1 762 775 - 12.8 gaaaaaagaaaaaa Broad-complex_3 762 772 - 11.3 aaaagaaaaaa Broad-complex_4 762 772 - 10.5 aaaagaaaaaa Evi1 762 775 - 10.4 gaaaaaagaaaaaa Klf4 762 771 - 9.11 aaagaaaaaa Foxd3 762 773 + 8.44 ttttttcttttt HMG-1 762 770 + 6.44 ttttttctt HMG-IY 762 777 - 13.2 gggaaaaaagaaaaaa Hunchback 762 771 - 11.3 aaagaaaaaa IRF1 762 773 - 8.07 aaaaagaaaaaa SQUA 762 775 - 7.13 gaaaaaagaaaaaa TBP 762 776 - 7.02 ggaaaaaagaaaaaa NR3C1 762 779 - 6.54 gggggaaaaaagaaaaaa ID1 762 773 + 12.7 ttttttcttttt Broad-complex_1 763 776 - 12.3 ggaaaaaagaaaaa Broad-complex_3 763 773 - 7.52 aaaaagaaaaa Broad-complex_4 763 773 - 9.05 aaaaagaaaaa Klf4 763 772 - 10.1 aaaagaaaaa Foxd3 763 774 + 8.42 tttttctttttt HMG-IY 763 778 - 10.2 ggggaaaaaagaaaaa TCF1 763 776 + 8.18 tttttcttttttcc Hunchback 763 772 - 8.9 aaaagaaaaa IRF1 763 774 - 10.7 aaaaaagaaaaa SQUA 763 776 - 8.15 ggaaaaaagaaaaa RUSH1-alfa 763 770 + 7.84 tttttctt ID1 763 774 + 13.5 tttttctttttt Broad-complex_1 764 777 - 8.16 gggaaaaaagaaaa Broad-complex_2 764 771 + 6.8 ttttcttt Broad-complex_3 764 774 - 6.66 aaaaaagaaaa Broad-complex_4 764 774 - 10.5 aaaaaagaaaa Dorsal_1 764 775 + 7.08 ttttcttttttc ELK1 764 773 - 7.15 aaaaagaaaa Evi1 764 777 - 6.49 gggaaaaaagaaaa Klf4 764 773 - 9.43 aaaaagaaaa Foxq1 764 774 + 7.83 ttttctttttt Foxd3 764 775 + 10 ttttcttttttc HMG-IY 764 779 - 9.3 gggggaaaaaagaaaa Hunchback 764 773 - 8.7 aaaaagaaaa SQUA 764 777 - 8.55 gggaaaaaagaaaa HNF4 764 776 - 6.02 ggaaaaaagaaaa ID1 764 775 + 10.3 ttttcttttttc Broad-complex_1 765 778 - 7.05 ggggaaaaaagaaa Broad-complex_3 765 775 - 7.84 gaaaaaagaaa Broad-complex_4 765 775 - 9.72 gaaaaaagaaa Dorsal_1 765 776 + 7.22 tttcttttttcc GAMYB 765 774 - 6.08 aaaaaagaaa Klf4 765 774 - 7.38 aaaaaagaaa HMG-1 765 773 + 6.99 tttcttttt HMG-IY 765 780 - 6.71 agggggaaaaaagaaa Hunchback 765 774 - 8.7 aaaaaagaaa SRY 765 773 - 7.26 aaaaagaaa ID1 765 776 + 9.44 tttcttttttcc Broad-complex_2 766 773 + 8.27 ttcttttt Dof2 766 771 - 8.07 aaagaa Dorsal_1 766 777 + 9.59 ttcttttttccc GAMYB 766 775 - 6.65 gaaaaaagaa Hunchback 766 775 - 11.6 gaaaaaagaa SPIB 766 772 - 6.43 aaaagaa SU_h 766 781 - 7.89 gagggggaaaaaagaa ID1 766 777 + 6.64 ttcttttttccc Broad-complex_2 767 774 + 6.18 tctttttt Dorsal_1 767 778 + 6.32 tcttttttcccc Hunchback 767 776 - 7.87 ggaaaaaaga MNB1A 767 771 - 7.39 aaaga PBF 767 771 - 6.45 aaaga REL 767 776 + 6.1 tcttttttcc Klf4 768 777 - 6.07 gggaaaaaag HMG-1 768 776 + 6.02 cttttttcc Hunchback 768 777 - 8.6 gggaaaaaag RUSH1-alfa 768 775 + 6.38 cttttttc FOXD1 769 776 - 6.06 ggaaaaaa HMG-IY 769 784 - 6.95 agggagggggaaaaaa Hunchback 769 778 - 8.85 ggggaaaaaa ID1 769 780 + 6.19 ttttttccccct ZNF42_5-13 773 782 - 9.46 ggagggggaa >NM_016441 (1000 bp) CLUSTER 1 Location: 757 to 787 Score: 6.98 HMG-IY: 0.482 Pax4: 0.3 Broad-complex_1: 0.171 ID1: 0.0762 ZNF42_5-13: 0.0673 Hunchback: 0.04 Klf4: 0.0239 Broad-complex_3: 0.0168 MYB.ph3: 0.0145 Broad-complex_4: 0.0136 IRF2: 0.00612 PBF: 0.00557 ZNF42_1-4: 0.00546 Foxd3: 0.00523 MNB1A: 0.00507 Dof2: 0.0037 SP1: 0.00368 IRF1: 0.00362 Foxa2: 0.00271 Evi1: 0.00227 Dorsal_1: 0.00211 c-ETS: 0.00198 Macho-1: 0.00168 Broad-complex_2: 0.00167 RUSH1-alfa: 0.00145 SPI1: 0.00129 NR3C1: 0.00102 MA0021: 0.000821 HNF4: 0.000787 YY1: 0.000776 SQUA: 0.000773 E74A: 0.000761 HMG-1: 0.000754 GABPA: 0.000673 Gata1: 0.000612 E2F1: 0.000601 FOXI1: 0.000568 SPIB: 0.000432 SRY: 0.000409 ELK1: 0.000403 Foxq1: 0.000394 FOXD1: 0.000352 SU_h: 0.000351 NR2F1: 0.000304 Nkx2-5: 0.000296 En1: 0.000272 TCF1: 0.000264 GATA3: 0.000248 Spz1: 0.000225 deltaEF1: 0.000205 ABI4: 0.000205 REL: 0.000194 FOXC1: 0.000192 FOXL1: 0.000183 Pax2: 0.000183 FOXF2: 0.00017 GAMYB: 0.000144 Pax5: 0.000141 TBP: 0.000138 Bapx1: 0.000125 Myb: 0.000122 Ubx: 0.000121 TEAD: 0.00012 GATA2: 0.000112 Sox5: 0.000108 SOX9: 0.000106 Athb-1: 0.000104 cEBP: 9.53e-05 Dorsal_2: 9.47e-05 Sox17: 8.91e-05 Staf: 7.69e-05 MafB: 6.14e-05 ARR10: 5.3e-05 Snail: 4.8e-05 Gfi: 2.69e-05 Fos: 2.68e-05 Arnt-Ahr: 2.33e-05 HAND1-TCF3: 2.2e-05 Arnt: 1.67e-05 TCF11-MafG: 1.06e-05 Prrx2: 9.67e-06 CFI-USP: 6.68e-06 RXR-VDR: 6.51e-06 RORA: 6.26e-06 Myf: 5.75e-06 Agamous: 5.68e-06 TFAP2A: 5.3e-06 MAX: 5.13e-06 HLF: 5.05e-06 Pbx: 4.99e-06 RUNX1: 3.53e-06 Chop-cEBP: 3.28e-06 Mycn: 3.24e-06 PPARG-RXRA: 2.46e-06 AGL3: 2.14e-06 Hox11-CTF1: 2.11e-06 NF-kappaB: 2.09e-06 CREB1: 1.9e-06 NFIL3: 1.67e-06 RELA: 1.6e-06 MYC-MAX: 1.45e-06 ELK4: 1.23e-06 USF1: 1.17e-06 Pax6: 9.56e-07 ESR1: 7.98e-07 TAL1-TCF3: 5.74e-07 CF2-II: 5.73e-07 ATHB5: 4.72e-07 MEF2A: 4.62e-07 bZIP910: 3.93e-07 NFKB1: 1.64e-07 NF-Y: 1.12e-07 T: 1.06e-07 PPARG: 6.76e-08 Ar: 6.58e-08 SRF: 4.55e-08 RORA1: 3.71e-08 bZIP911: 3.46e-08 NHLH1: 3.32e-08 RREB1: 1.69e-08 Roaz: 5.13e-09 NR1H2-RXR: 1.66e-09 TP53: 4.82e-10 GAAACTTTTTTCTTTTTTCCCCCTCCCTCCC Broad-complex_3 757 767 + 8.15 gaaactttttt Broad-complex_4 757 767 - 6.36 aaaaaagtttc NR2F1 757 770 + 7.24 gaaacttttttctt Foxd3 757 768 + 7.1 gaaacttttttc HMG-IY 757 772 - 6.79 aaaagaaaaaagtttc Pax4 757 786 + 13.5 gaaacttttttcttttttccccctccctcc HNF4 757 769 - 8.01 agaaaaaagtttc Broad-complex_1 758 771 - 9.12 aaagaaaaaagttt Broad-complex_3 758 768 - 6.53 gaaaaaagttt Broad-complex_4 758 768 - 7.24 gaaaaaagttt Foxd3 758 769 + 8.08 aaacttttttct HMG-IY 758 773 - 7.57 aaaaagaaaaaagttt IRF2 758 775 - 11.3 gaaaaaagaaaaaagttt MYB.ph3 758 766 + 10 aaacttttt MYB.ph3 758 766 - 9.13 aaaaagttt Pax4 758 787 + 14.4 aaacttttttcttttttccccctccctccc NR3C1 758 775 - 9.43 gaaaaaagaaaaaagttt Broad-complex_1 759 772 - 11.4 aaaagaaaaaagtt Broad-complex_2 759 766 + 7.43 aacttttt Dof2 759 764 - 7.14 aaagtt Foxd3 759 770 + 8.91 aacttttttctt HMG-IY 759 774 - 9.08 aaaaaagaaaaaagtt Foxa2 759 770 + 9.07 aacttttttctt Hunchback 759 768 - 6.61 gaaaaaagtt Broad-complex_1 760 773 - 8.75 aaaaagaaaaaagt Broad-complex_4 760 770 - 8.48 aagaaaaaagt Pax5 760 779 - 6.4 gggggaaaaaagaaaaaagt FOXF2 760 773 - 6.58 aaaaagaaaaaagt Klf4 760 769 - 6.45 agaaaaaagt Foxq1 760 770 + 6.31 acttttttctt Foxd3 760 771 + 7.33 acttttttcttt FOXI1 760 771 + 7.89 acttttttcttt HMG-IY 760 775 - 15.2 gaaaaaagaaaaaagt Foxa2 760 771 + 8.35 acttttttcttt MNB1A 760 764 - 7.27 aaagt PBF 760 764 - 7.69 aaagt ID1 760 771 + 7.23 acttttttcttt Broad-complex_1 761 774 - 14.2 aaaaaagaaaaaag Broad-complex_3 761 771 - 6.44 aaagaaaaaag Broad-complex_4 761 771 - 7.52 aaagaaaaaag FOXF2 761 774 - 7.14 aaaaaagaaaaaag Klf4 761 770 - 10.7 aagaaaaaag Foxd3 761 772 + 7.16 cttttttctttt HMG-1 761 769 + 6.22 cttttttct HMG-IY 761 776 - 13.3 ggaaaaaagaaaaaag Hunchback 761 770 - 9.48 aagaaaaaag IRF1 761 772 - 7.96 aaaagaaaaaag SQUA 761 774 - 7 aaaaaagaaaaaag RUSH1-alfa 761 768 + 6.38 cttttttc ID1 761 772 + 6.73 cttttttctttt Broad-complex_1 762 775 - 12.8 gaaaaaagaaaaaa Broad-complex_3 762 772 - 11.3 aaaagaaaaaa Broad-complex_4 762 772 - 10.5 aaaagaaaaaa Evi1 762 775 - 10.4 gaaaaaagaaaaaa Klf4 762 771 - 9.11 aaagaaaaaa Foxd3 762 773 + 8.44 ttttttcttttt HMG-1 762 770 + 6.44 ttttttctt HMG-IY 762 777 - 13.2 gggaaaaaagaaaaaa Hunchback 762 771 - 11.3 aaagaaaaaa IRF1 762 773 - 8.07 aaaaagaaaaaa SQUA 762 775 - 7.13 gaaaaaagaaaaaa TBP 762 776 - 7.02 ggaaaaaagaaaaaa NR3C1 762 779 - 6.54 gggggaaaaaagaaaaaa ID1 762 773 + 12.7 ttttttcttttt Broad-complex_1 763 776 - 12.3 ggaaaaaagaaaaa Broad-complex_3 763 773 - 7.52 aaaaagaaaaa Broad-complex_4 763 773 - 9.05 aaaaagaaaaa Klf4 763 772 - 10.1 aaaagaaaaa Foxd3 763 774 + 8.42 tttttctttttt HMG-IY 763 778 - 10.2 ggggaaaaaagaaaaa TCF1 763 776 + 8.18 tttttcttttttcc Hunchback 763 772 - 8.9 aaaagaaaaa IRF1 763 774 - 10.7 aaaaaagaaaaa SQUA 763 776 - 8.15 ggaaaaaagaaaaa RUSH1-alfa 763 770 + 7.84 tttttctt ID1 763 774 + 13.5 tttttctttttt Broad-complex_1 764 777 - 8.16 gggaaaaaagaaaa Broad-complex_2 764 771 + 6.8 ttttcttt Broad-complex_3 764 774 - 6.66 aaaaaagaaaa Broad-complex_4 764 774 - 10.5 aaaaaagaaaa Dorsal_1 764 775 + 7.08 ttttcttttttc ELK1 764 773 - 7.15 aaaaagaaaa Evi1 764 777 - 6.49 gggaaaaaagaaaa Klf4 764 773 - 9.43 aaaaagaaaa Foxq1 764 774 + 7.83 ttttctttttt Foxd3 764 775 + 10 ttttcttttttc HMG-IY 764 779 - 9.3 gggggaaaaaagaaaa Hunchback 764 773 - 8.7 aaaaagaaaa SQUA 764 777 - 8.55 gggaaaaaagaaaa HNF4 764 776 - 6.02 ggaaaaaagaaaa ID1 764 775 + 10.3 ttttcttttttc Broad-complex_1 765 778 - 7.05 ggggaaaaaagaaa Broad-complex_3 765 775 - 7.84 gaaaaaagaaa Broad-complex_4 765 775 - 9.72 gaaaaaagaaa Dorsal_1 765 776 + 7.22 tttcttttttcc GAMYB 765 774 - 6.08 aaaaaagaaa Klf4 765 774 - 7.38 aaaaaagaaa HMG-1 765 773 + 6.99 tttcttttt HMG-IY 765 780 - 6.71 agggggaaaaaagaaa Hunchback 765 774 - 8.7 aaaaaagaaa SRY 765 773 - 7.26 aaaaagaaa ID1 765 776 + 9.44 tttcttttttcc Broad-complex_2 766 773 + 8.27 ttcttttt Dof2 766 771 - 8.07 aaagaa Dorsal_1 766 777 + 9.59 ttcttttttccc GAMYB 766 775 - 6.65 gaaaaaagaa Hunchback 766 775 - 11.6 gaaaaaagaa SPIB 766 772 - 6.43 aaaagaa SU_h 766 781 - 7.89 gagggggaaaaaagaa ID1 766 777 + 6.64 ttcttttttccc Broad-complex_2 767 774 + 6.18 tctttttt Dorsal_1 767 778 + 6.32 tcttttttcccc Hunchback 767 776 - 7.87 ggaaaaaaga MNB1A 767 771 - 7.39 aaaga PBF 767 771 - 6.45 aaaga REL 767 776 + 6.1 tcttttttcc Klf4 768 777 - 6.07 gggaaaaaag HMG-1 768 776 + 6.02 cttttttcc Hunchback 768 777 - 8.6 gggaaaaaag RUSH1-alfa 768 775 + 6.38 cttttttc FOXD1 769 776 - 6.06 ggaaaaaa HMG-IY 769 784 - 6.95 agggagggggaaaaaa Hunchback 769 778 - 8.85 ggggaaaaaa ID1 769 780 + 6.19 ttttttccccct ZNF42_5-13 773 782 - 9.46 ggagggggaa >NM_001307 (1000 bp) CLUSTER 1 Location: 847 to 978 Score: 6.31 CF2-II: 2.32 ELK4: 1.3 Snail: 0.66 bZIP910: 0.643 CREB1: 0.29 deltaEF1: 0.201 GABPA: 0.155 TCF11-MafG: 0.0943 FOXL1: 0.055 Mycn: 0.0306 ELK1: 0.0297 ZNF42_5-13: 0.0273 c-ETS: 0.0245 USF1: 0.0213 ZNF42_1-4: 0.0205 Bapx1: 0.0197 Arnt: 0.0172 E74A: 0.0168 MafB: 0.0109 HLF: 0.0102 FOXC1: 0.0101 MAX: 0.0101 TBP: 0.00896 GATA2: 0.00783 SPIB: 0.00756 Pax2: 0.00719 YY1: 0.00694 ABI4: 0.00671 Gata1: 0.00671 ESR1: 0.00662 SPI1: 0.00651 TFAP2A: 0.00617 RELA: 0.00609 SP1: 0.00609 En1: 0.00582 Macho-1: 0.00556 Arnt-Ahr: 0.00556 NR2F1: 0.0052 Fos: 0.00488 RUSH1-alfa: 0.00455 ARR10: 0.0044 GATA3: 0.00397 SQUA: 0.00392 NFIL3: 0.0038 NFKB1: 0.00326 Ubx: 0.00307 Nkx2-5: 0.00267 HNF4: 0.00249 REL: 0.00207 AGL3: 0.00188 HMG-1: 0.00154 GAMYB: 0.00153 Klf4: 0.00139 NF-kappaB: 0.00128 Dorsal_2: 0.0012 IRF1: 0.00105 ID1: 0.00101 RORA1: 0.000991 CFI-USP: 0.000914 Sox5: 0.000865 Dorsal_1: 0.000849 bZIP911: 0.000797 Gfi: 0.000754 Broad-complex_3: 0.000744 MEF2A: 0.000742 Spz1: 0.00072 RORA: 0.000687 RUNX1: 0.000652 HMG-IY: 0.000648 Sox17: 0.000565 MA0021: 0.000564 Pax5: 0.000563 NR3C1: 0.000525 PBF: 0.000522 Broad-complex_4: 0.00051 Broad-complex_2: 0.000486 FOXI1: 0.000486 Broad-complex_1: 0.000475 NHLH1: 0.000412 E2F1: 0.000395 Agamous: 0.000392 MNB1A: 0.000372 Foxa2: 0.000359 Dof2: 0.000287 Pax6: 0.000281 TEAD: 0.000264 SOX9: 0.000249 HAND1-TCF3: 0.000233 cEBP: 0.000225 TAL1-TCF3: 0.000222 PPARG: 0.000215 Myb: 0.000163 FOXD1: 0.000151 MYB.ph3: 0.000138 SRY: 0.000135 TP53: 9.61e-05 Prrx2: 9.57e-05 Chop-cEBP: 8.79e-05 Staf: 7.95e-05 MYC-MAX: 7.69e-05 Hox11-CTF1: 6.51e-05 FOXF2: 6.11e-05 Myf: 5.24e-05 Roaz: 5.11e-05 Ar: 4.95e-05 SU_h: 4.79e-05 Hunchback: 4.15e-05 Foxq1: 3.48e-05 Pax4: 3.33e-05 RXR-VDR: 2.33e-05 Foxd3: 2.3e-05 RREB1: 1.94e-05 Pbx: 1.52e-05 IRF2: 1.33e-05 Athb-1: 1.25e-05 TCF1: 1.14e-05 NF-Y: 1.04e-05 SRF: 2.77e-06 T: 2e-06 ATHB5: 1.41e-06 Evi1: 1.33e-06 PPARG-RXRA: 1.47e-07 NR1H2-RXR: 3.97e-09 GACTTCCGGTTCAGGTGagtgtcccTTCGGTGACGTCAGGTCATCctcggccgcccctccggtcccgcctccccctcccgcgctcccggggcgcgcgggccgcgcccccgACGCCCTACATATACTCAGGTG GABPA 847 856 - 9.24 accggaagtc ELK4 848 856 - 11 accggaagt E74A 849 855 - 6.97 ccggaag ELK1 849 858 - 7.93 gaaccggaag SPIB 850 856 - 6.34 accggaa Snail 858 863 + 7.82 caggtg deltaEF1 858 863 - 6.74 cacctg CREB1 872 883 + 8.79 ttcggtgacgtc bZIP910 876 882 + 7.87 gtgacgt bZIP910 879 885 - 9.37 ctgacgt TCF11-MafG 886 891 - 6.69 gatgac RORA1 957 970 - 6.31 tatatgtagggcgt TBP 957 971 - 7.98 gtatatgtagggcgt NFIL3 959 969 - 6.02 atatgtagggc AGL3 962 971 + 6.71 ctacatatac CF2-II 962 971 + 10.9 ctacatatac CF2-II 962 971 - 13.2 gtatatgtag FOXI1 962 973 - 6.1 gagtatatgtag SQUA 962 975 + 8.52 ctacatatactcag TBP 962 976 + 8.43 ctacatatactcagg FOXC1 963 970 - 8.64 tatatgta FOXL1 963 970 + 10.3 tacatata FOXL1 963 970 - 8.99 tatatgta Broad-complex_1 965 978 + 6.26 catatactcaggtg RUSH1-alfa 965 972 - 6.94 agtatatg ARR10 966 973 + 6.35 atatactc FOXL1 967 974 - 6.59 tgagtata Bapx1 967 975 - 7.69 ctgagtata Fos 968 975 - 6.51 ctgagtat FOXC1 969 976 - 6.66 cctgagta Snail 973 978 + 8.64 caggtg deltaEF1 973 978 - 7.57 cacctg >NM_002037 (1000 bp) CLUSTER 1 Location: 7 to 659 Score: 6.23 Myf: 2.71 RREB1: 2.22 Chop-cEBP: 1.28 SQUA: 0.704 Athb-1: 0.547 Gfi: 0.456 ZNF42_1-4: 0.437 Hunchback: 0.378 Snail: 0.362 SPIB: 0.354 Klf4: 0.349 SU_h: 0.293 NF-Y: 0.28 Foxd3: 0.265 E74A: 0.264 Evi1: 0.236 c-ETS: 0.23 ZNF42_5-13: 0.208 ELK1: 0.203 FOXI1: 0.201 SPI1: 0.198 ID1: 0.197 NR3C1: 0.195 Broad-complex_4: 0.192 HMG-IY: 0.19 SP1: 0.19 Dof2: 0.188 MNB1A: 0.184 Sox5: 0.172 PBF: 0.158 Broad-complex_3: 0.154 GATA3: 0.151 HNF4: 0.146 Macho-1: 0.143 MA0021: 0.139 Pax4: 0.136 Broad-complex_2: 0.134 deltaEF1: 0.131 HMG-1: 0.119 RELA: 0.119 RUSH1-alfa: 0.115 SOX9: 0.114 Broad-complex_1: 0.113 Nkx2-5: 0.107 Staf: 0.106 TCF11-MafG: 0.103 IRF1: 0.0941 En1: 0.094 YY1: 0.0924 GATA2: 0.092 Gata1: 0.0912 Pax2: 0.0902 Bapx1: 0.0878 Pax5: 0.0843 HAND1-TCF3: 0.0811 Arnt: 0.0783 SRY: 0.0771 Ubx: 0.0756 Prrx2: 0.0742 FOXC1: 0.0733 TBP: 0.0687 Spz1: 0.068 GAMYB: 0.067 Sox17: 0.0668 MafB: 0.0665 Myb: 0.0657 ELK4: 0.0654 REL: 0.0643 FOXL1: 0.0624 Dorsal_1: 0.0606 ABI4: 0.0589 Pbx: 0.0572 Agamous: 0.0561 GABPA: 0.0552 E2F1: 0.0512 ARR10: 0.05 MYB.ph3: 0.0481 Foxa2: 0.0445 RUNX1: 0.0417 ATHB5: 0.0398 TFAP2A: 0.0383 cEBP: 0.034 NR2F1: 0.0315 TEAD: 0.0302 CFI-USP: 0.0284 Dorsal_2: 0.0283 Fos: 0.0272 Mycn: 0.026 FOXD1: 0.0257 AGL3: 0.0243 NFKB1: 0.0229 HLF: 0.0209 Arnt-Ahr: 0.0199 NHLH1: 0.0192 FOXF2: 0.0166 Hox11-CTF1: 0.0141 MYC-MAX: 0.0136 Foxq1: 0.0135 USF1: 0.0134 T: 0.013 MAX: 0.0122 NF-kappaB: 0.0101 NFIL3: 0.00999 Ar: 0.0094 RORA: 0.00933 IRF2: 0.00924 TCF1: 0.0086 Pax6: 0.00688 MEF2A: 0.00498 CREB1: 0.00484 ESR1: 0.0047 CF2-II: 0.00455 TAL1-TCF3: 0.003 bZIP910: 0.00287 TP53: 0.00158 RORA1: 0.00154 RXR-VDR: 0.00146 PPARG: 0.000674 PPARG-RXRA: 0.00062 SRF: 0.000517 bZIP911: 0.000321 Roaz: 0.000116 NR1H2-RXR: 3.77e-05 TCAGGAAGccaaagtGTTTCTTTTTATGAAGTTACATCCTGCCATAGaaaagctggataggaaataaagacCGATGCACTCCCAACTGTATACTAAACCggCAATTATTTcatcaagggaaatatgagcaaaagCTCAGATTCAgtgaaggggaaaaaaacatgagaagtttgaatgTTATGAGAAACCAAAGACAACCAATGACTACAATTAAacgaGGTTTTTTGGGGGTGGGGCGGGGAATGTAcgaaCAAATCTCTGtcaTTTCAGGTTCcttagTCGCCGCTTGGCCCCTCCCCCTATttcagtaatacttcctccagacttttgcTAGAAAAAAAATATAAATGAGTGTCCGCAGAAATAGGGGACTGAtaaaatgatcctaatctccttctcctcCTCATTGTTATTTGTTGtgcgtttcCACGTTTCAGGACAGGATTCTACTttgctccgtactcttttcagtttgatcaaagaaaacgctgctaTCACCGCCCAattttccatttcatcctctcaccctcAAATGAAAAGacaccagaAAGGCAAGATAGCCctgtctcgAGGCAGTTTCCCATGGTTTTGGGGGAATGGCAGGTGccaatCTGCAGCAGCAGCTGCAACCTTCCGCAAAGCGGAAACTGCAG SPIB 7 13 + 6.06 tcaggaa E74A 8 14 + 7.05 caggaag HMG-IY 22 37 - 6.14 cttcataaaaagaaac SQUA 22 35 - 9.43 tcataaaaagaaac Hunchback 26 35 - 6.82 tcataaaaag Staf 34 53 + 6.25 gaagttacatcctgccatag Chop-cEBP 78 89 + 10.2 cgatgcactccc Bapx1 81 89 - 7.25 gggagtgca Myb 89 96 - 6.3 tacagttg Broad-complex_3 95 105 + 6.29 tatactaaacc Athb-1 108 115 + 8.89 caattatt Nkx2-5 108 114 - 6.04 ataattg ATHB5 108 116 + 6.06 caattattt Gfi 141 150 - 6.37 tgaatctgag SU_h 184 199 + 6.08 ttatgagaaaccaaag NF-Y 199 214 + 7.75 gacaaccaatgactac Nkx2-5 214 220 - 6.34 ttaattg RREB1 225 244 - 7.6 cgccccacccccaaaaaacc Hunchback 226 235 - 6.53 cccaaaaaac Hunchback 227 236 - 7.64 ccccaaaaaa RREB1 228 247 - 12.1 ccccgccccacccccaaaaa Macho-1 231 239 + 6.35 ttgggggtg SP1 239 248 + 8.64 ggggcgggga TEAD 242 253 - 7.18 tacattccccgc ZNF42_1-4 243 248 + 6.71 cgggga Gfi 258 267 + 8.14 caaatctctg ELK1 271 280 - 6.89 gaacctgaaa NF-Y 286 301 - 6.33 aggggccaagcggcga HNF4 287 299 - 6.46 gggccaagcggcg HNF4 294 306 - 6.6 gggggaggggcca Klf4 298 307 - 6.6 agggggaggg Klf4 299 308 - 6.36 tagggggagg ZNF42_5-13 300 309 - 6.92 atagggggag ZNF42_1-4 301 306 - 6.61 ggggga Broad-complex_4 338 348 + 7.48 tagaaaaaaaa Hunchback 338 347 + 6.77 tagaaaaaaa Hunchback 339 348 + 6.2 agaaaaaaaa Hunchback 340 349 + 7.7 gaaaaaaaat Foxd3 342 353 - 8.1 ttatattttttt TBP 348 362 + 6.52 atataaatgagtgtc Staf 362 381 - 6.28 tcagtcccctatttctgcgg Broad-complex_2 368 375 - 6.34 ccctattt ZNF42_1-4 372 377 + 7.59 agggga Sox17 409 417 + 6.38 ctcattgtt Sox5 412 418 - 7.27 taacaat FOXI1 414 425 + 7.52 tgttatttgttg Arnt 434 439 - 6.33 aacgtg NR3C1 440 457 - 7.28 agtagaatcctgtcctga SP1 501 510 - 6.21 tgggcggtga Klf4 537 546 + 6.38 aaatgaaaag Evi1 555 568 + 7.64 aaggcaagatagcc GATA3 561 566 + 6.34 agatag SU_h 577 592 - 7.96 ccatgggaaactgcct RELA 578 587 + 6.95 ggcagtttcc SOX9 587 595 - 6.85 aaaccatgg Pax5 590 609 + 7.2 tggttttgggggaatggcag ZNF42_5-13 594 603 + 6.38 tttgggggaa Macho-1 595 603 + 6.32 ttgggggaa Klf4 596 605 + 6.02 tgggggaatg ZNF42_1-4 596 601 + 6.05 tggggg ZNF42_1-4 597 602 + 7.41 ggggga Snail 607 612 + 8.56 caggtg deltaEF1 607 612 - 7.49 cacctg Myf 618 629 + 7.7 ctgcagcagcag NHLH1 621 632 + 6.16 cagcagcagctg Myf 621 632 + 11.5 cagcagcagctg Myf 621 632 - 8.22 cagctgctgctg NHLH1 624 635 + 6.66 cagcagctgcaa Myf 624 635 + 7.29 cagcagctgcaa Spz1 629 639 - 6.18 aaggttgcagc SPI1 637 642 - 6.28 cggaag SPIB 638 644 - 6.57 tgcggaa ID1 641 652 - 6.09 ttccgctttgcg MA0021 644 649 + 6.58 aaagcg ELK1 644 653 + 6.01 aaagcggaaa SPIB 646 652 + 7.82 agcggaa E74A 647 653 + 6.29 gcggaaa Myf 648 659 + 7.81 cggaaactgcag c-ETS 648 653 - 6.02 tttccg >NM_153449 (1000 bp) CLUSTER 1 Location: 163 to 720 Score: 5.23 MYB.ph3: 1.74 Foxd3: 1.68 ESR1: 1.05 Chop-cEBP: 0.72 MEF2A: 0.624 FOXI1: 0.528 Agamous: 0.428 Spz1: 0.414 HMG-IY: 0.287 Broad-complex_2: 0.276 TFAP2A: 0.261 AGL3: 0.223 HMG-1: 0.218 REL: 0.215 ARR10: 0.211 Snail: 0.204 ABI4: 0.198 MNB1A: 0.181 Pax4: 0.171 HLF: 0.17 Myb: 0.161 MA0021: 0.152 SP1: 0.148 Staf: 0.14 GATA3: 0.139 Macho-1: 0.137 Dof2: 0.133 PBF: 0.131 Broad-complex_1: 0.127 IRF2: 0.126 Foxa2: 0.125 GATA2: 0.121 En1: 0.111 Broad-complex_4: 0.109 Dorsal_2: 0.108 RUSH1-alfa: 0.107 NF-kappaB: 0.104 ELK1: 0.0979 Prrx2: 0.0979 deltaEF1: 0.0958 Dorsal_1: 0.0923 NR2F1: 0.0905 Fos: 0.0899 c-ETS: 0.089 Gata1: 0.0888 ZNF42_5-13: 0.0874 Hunchback: 0.0852 ZNF42_1-4: 0.0847 Ubx: 0.0823 NR3C1: 0.0779 NHLH1: 0.0778 SQUA: 0.0759 RORA: 0.0702 E2F1: 0.0672 FOXL1: 0.064 MafB: 0.0582 YY1: 0.0577 SPI1: 0.0569 Gfi: 0.0565 ID1: 0.0522 Pax2: 0.0516 CFI-USP: 0.0516 cEBP: 0.0497 FOXC1: 0.0488 Nkx2-5: 0.0484 Athb-1: 0.048 RUNX1: 0.0476 HNF4: 0.0462 RELA: 0.0422 SRY: 0.0414 Broad-complex_3: 0.0403 GAMYB: 0.0403 Klf4: 0.0402 Bapx1: 0.0384 E74A: 0.0381 NFKB1: 0.0376 SOX9: 0.0374 Arnt-Ahr: 0.0369 Myf: 0.0353 Pax5: 0.0333 HAND1-TCF3: 0.0318 Roaz: 0.0304 TCF11-MafG: 0.0302 SPIB: 0.0281 CF2-II: 0.0279 GABPA: 0.0247 TCF1: 0.0227 Sox5: 0.0224 IRF1: 0.022 Evi1: 0.0219 FOXD1: 0.0213 Foxq1: 0.0212 T: 0.0176 TEAD: 0.0164 Arnt: 0.016 Mycn: 0.0157 Sox17: 0.0149 SU_h: 0.0145 ELK4: 0.014 MYC-MAX: 0.013 RORA1: 0.0121 MAX: 0.012 TBP: 0.00844 USF1: 0.00789 RXR-VDR: 0.00602 bZIP910: 0.00586 CREB1: 0.00557 Pbx: 0.00535 FOXF2: 0.00421 PPARG: 0.0034 NFIL3: 0.0034 PPARG-RXRA: 0.00339 Pax6: 0.00315 Ar: 0.00267 ATHB5: 0.00267 NF-Y: 0.00219 RREB1: 0.00217 NR1H2-RXR: 0.00194 TAL1-TCF3: 0.00152 Hox11-CTF1: 0.0015 TP53: 0.000408 SRF: 0.000271 bZIP911: 0.000173 GAGAACGACCGCGGGGCTTTTCatCCAAAAAGAGCtcctgagtctgaaaTAACTGTTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTtttGAGACGGAATcttgaGCTGTTACCCAGGCTGGAGTGCAATGGCGGAGTTCAGCTCACTGTAACCTCCGCCTCCtgggttcaagcgattctCCTGTCTCAGCCTCCCAAGCAGTTGGGActatagGAGCGCACCGccaagcccCCTAATTTTGTTATTTTTAGTAAAGACTgGGTTTCGCCATGttggccaggctggtctcGAACCCCTGACCTCAAGttatccgctctcctcggcctcCAAAAGTGCTAGGATTACAGGTGTGAGCCAccgtgcgcggcccgAAATAACTCTTTaCAGGATCTcgcccTGGGCCTTCCcagcccagccggcccgcccgcggggatagcccgggcaCTATCTccctgctgcaggcggtGAGGGGCTCGGGTATCTTTGAAAATAGATACGTTCACACCCTCCTAACGGCggcgccaagggtggtgggtcCCAAAACTGTTT HMG-1 163 171 - 7.46 gtcgttctc TFAP2A 171 179 - 7.41 gccccgcgg NF-kappaB 175 184 + 6.19 ggggcttttc REL 175 184 + 7.02 ggggcttttc AGL3 187 196 + 8.18 ccaaaaagag Agamous 187 197 + 8.71 ccaaaaagagc Hunchback 187 196 + 6.55 ccaaaaagag MEF2A 187 196 - 6.2 ctctttttgg MYB.ph3 212 220 + 7.76 taactgttt Foxd3 218 229 + 7.26 ttttgtttgttt FOXI1 218 229 + 7.16 ttttgtttgttt Foxd3 222 233 + 8.72 gtttgtttgttt FOXI1 222 233 + 7.67 gtttgtttgttt Foxd3 226 237 + 8.62 gtttgtttgttt FOXI1 226 237 + 7.57 gtttgtttgttt Foxd3 230 241 + 8.46 gtttgtttgttt FOXI1 230 241 + 7.4 gtttgtttgttt Foxd3 234 245 + 8.35 gtttgtttgttt FOXI1 234 245 + 7.3 gtttgtttgttt Foxd3 238 249 + 8.29 gtttgtttgttt FOXI1 238 249 + 7.24 gtttgtttgttt Foxd3 242 253 + 8.38 gtttgtttgttt FOXI1 242 253 + 7.32 gtttgtttgttt Foxd3 246 257 + 8.34 gtttgtttgttt FOXI1 246 257 + 7.29 gtttgtttgttt ELK1 261 270 + 6.21 gagacggaat Spz1 276 286 - 8.05 tgggtaacagc Staf 278 297 + 6.78 tgttacccaggctggagtgc Chop-cEBP 292 303 + 9.03 gagtgcaatggc NR2F1 298 311 - 6.06 tgaactccgccatt ESR1 309 326 + 9.43 tcagctcactgtaacctc ESR1 310 327 - 6.25 ggaggttacagtgagctg ZNF42_5-13 324 333 - 6.51 ggaggcggag Staf 351 370 + 6.6 cctgtctcagcctcccaagc NHLH1 367 378 - 6.52 tcccaactgctt Myb 368 375 + 7.24 agcagttg ABI4 385 394 - 6.95 cggtgcgctc Agamous 403 413 + 6.45 cctaattttgt Prrx2 405 409 - 6.97 aatta Broad-complex_1 407 420 - 7.97 aaaaataacaaaat HMG-IY 407 422 - 9.33 ctaaaaataacaaaat Foxd3 408 419 + 7.52 ttttgttatttt SQUA 409 422 - 7.08 ctaaaaataacaaa SRY 409 417 - 6.09 aataacaaa MEF2A 413 422 + 10.1 ttatttttag SQUA 413 426 + 7.03 ttatttttagtaaa Hunchback 415 424 - 6.47 tactaaaaat Broad-complex_4 420 430 + 6.77 tagtaaagact MNB1A 424 428 + 6.07 aaaga HLF 432 443 + 7.15 ggtttcgccatg Macho-1 461 469 - 6 caggggttc RORA 468 477 - 6.45 cttgaggtca IRF2 499 516 + 7.64 caaaagtgctaggattac MA0021 501 506 + 7.2 aaagtg MNB1A 501 505 + 6.03 aaagt PBF 501 505 + 6.45 aaagt Chop-cEBP 509 520 - 6.2 acctgtaatcct Spz1 509 519 + 6.79 aggattacagg Snail 516 521 + 7.94 caggtg deltaEF1 516 521 - 6.86 cacctg Fos 521 528 + 6.33 gtgagcca Broad-complex_2 543 550 - 6.37 agttattt MYB.ph3 546 554 + 6.99 taactcttt ARR10 556 563 - 7.11 agatcctg REL 569 578 + 6.12 tgggccttcc GATA3 616 621 - 6.81 agatag Pax4 638 667 - 6.64 tatctattttcaaagatacccgagcccctc NR2F1 649 662 + 6.02 gtatctttgaaaat Pax4 649 678 + 6.18 gtatctttgaaaatagatacgttcacaccc Broad-complex_1 651 664 + 7.75 atctttgaaaatag Dof2 651 656 - 6.16 aaagat MNB1A 652 656 - 6.06 aaaga Broad-complex_4 655 665 + 7.02 ttgaaaataga HMG-IY 655 670 + 7.36 ttgaaaatagatacgt MEF2A 655 664 - 7.33 ctattttcaa SQUA 655 668 + 6.95 ttgaaaatagatac FOXL1 656 663 + 6.26 tgaaaata ID1 656 667 - 6.79 tatctattttca Broad-complex_1 658 671 + 6.24 aaaatagatacgtt Pax4 658 687 + 7.94 aaaatagatacgttcacaccctcctaacgg NR3C1 658 675 + 6.3 aaaatagatacgttcaca Broad-complex_2 659 666 - 9.06 atctattt CF2-II 659 668 - 6.59 gtatctattt FOXI1 659 670 - 7.5 acgtatctattt Foxa2 659 670 - 7.88 acgtatctattt MYB.ph3 659 667 - 7.26 tatctattt Pax4 659 688 + 6.22 aaatagatacgttcacaccctcctaacggc FOXL1 660 667 + 6.98 aatagata ARR10 663 670 + 7.27 agatacgt Agamous 709 719 + 7.25 ccaaaactgtt MYB.ph3 712 720 + 9.8 aaactgttt MYB.ph3 712 720 - 9.28 aaacagttt >NM_018952 (1000 bp) CLUSTER 1 Location: 514 to 936 Score: 5.84 IRF1: 2.06 NF-Y: 1.26 Myf: 0.517 RREB1: 0.425 HMG-IY: 0.416 Klf4: 0.377 HNF4: 0.316 Gfi: 0.31 Dorsal_1: 0.279 NFKB1: 0.263 Pax4: 0.234 Snail: 0.221 NF-kappaB: 0.184 ABI4: 0.181 ZNF42_1-4: 0.181 E74A: 0.173 Agamous: 0.172 RELA: 0.164 ELK1: 0.155 Macho-1: 0.154 Dorsal_2: 0.145 ZNF42_5-13: 0.138 c-ETS: 0.132 YY1: 0.132 SPI1: 0.124 MAX: 0.12 REL: 0.114 ID1: 0.11 SP1: 0.106 MNB1A: 0.105 PBF: 0.103 Dof2: 0.097 Foxd3: 0.0929 Sox17: 0.0914 HMG-1: 0.0911 RUSH1-alfa: 0.091 AGL3: 0.0901 deltaEF1: 0.0896 Broad-complex_4: 0.088 ARR10: 0.086 Broad-complex_3: 0.0855 En1: 0.0829 NR2F1: 0.0752 cEBP: 0.0672 Hunchback: 0.0664 TCF11-MafG: 0.0645 GATA3: 0.0634 MA0021: 0.0629 MYB.ph3: 0.0589 SRY: 0.0584 SPIB: 0.0566 Spz1: 0.0553 CFI-USP: 0.0489 USF1: 0.0484 Gata1: 0.0462 FOXL1: 0.0447 Broad-complex_2: 0.0443 Sox5: 0.0413 Bapx1: 0.0408 Foxa2: 0.0406 NHLH1: 0.0404 Fos: 0.0389 Mycn: 0.0365 GABPA: 0.0359 MafB: 0.0356 E2F1: 0.0344 bZIP911: 0.0341 MYC-MAX: 0.0336 GATA2: 0.0332 Broad-complex_1: 0.0327 NR3C1: 0.0321 Pax5: 0.0314 Pax2: 0.0313 Myb: 0.0312 RUNX1: 0.0309 Foxq1: 0.0288 Nkx2-5: 0.0282 GAMYB: 0.0272 Staf: 0.0269 Ubx: 0.026 Chop-cEBP: 0.0249 FOXC1: 0.0234 TFAP2A: 0.0232 CREB1: 0.0211 SQUA: 0.021 TEAD: 0.0191 TAL1-TCF3: 0.0188 HAND1-TCF3: 0.0166 Arnt: 0.013 TBP: 0.0119 SOX9: 0.0116 SU_h: 0.0112 TCF1: 0.0103 Pbx: 0.00976 FOXI1: 0.00933 ELK4: 0.00849 RORA: 0.00828 HLF: 0.00785 Evi1: 0.00778 Athb-1: 0.00773 FOXD1: 0.00683 Arnt-Ahr: 0.00618 Prrx2: 0.00577 IRF2: 0.00495 ATHB5: 0.00457 Pax6: 0.00376 PPARG-RXRA: 0.0033 MEF2A: 0.00289 ESR1: 0.00256 T: 0.00221 NFIL3: 0.00215 Ar: 0.00214 FOXF2: 0.00203 RXR-VDR: 0.0016 CF2-II: 0.00146 RORA1: 0.00131 Roaz: 0.000978 Hox11-CTF1: 0.000524 bZIP910: 0.000465 SRF: 0.000399 PPARG: 0.000183 TP53: 8.96e-05 NR1H2-RXR: 2.95e-05 GCTTTCATTTTGCCCTtatgCAGGTGgcaactctagacaccgTTTCCTGCTCCTGCCTCACCCCAAAATTGTCTCAgaacagtccctatgcagaggatttggggtagacctttacTAGAAGAGGGagcagagctcctGTGGAGAGTGGGGAGGTTCGGAAAAGAACCCCCTTCCCagctgtaccGTTATGGCTTTTGCACTCTGATTTCCTGCCCCCCCAAATCTCACCCCTTCTCAGATTGGGGTTTCCCCAAAAAGAGAGAAGGagaagaaaagaaGATGGCgactgagaaaagggttgctggtggagcagccatGAAGAAATGCAATAAAttCCTTGTTGTTTTatgaaaatttacaactttgtgatagaagtttatgagtggttgaatCCAGCGATTGGCCGGCGCCGGTCATGTGGCC IRF1 514 525 - 11 caaaatgaaagc MNB1A 514 518 - 6.17 aaagc PBF 514 518 - 6.13 aaagc HNF4 517 529 - 6.01 agggcaaaatgaa Snail 534 539 + 7.56 caggtg deltaEF1 534 539 - 6.48 cacctg E74A 556 562 - 6.9 caggaaa ELK1 556 565 - 7.02 gagcaggaaa c-ETS 556 561 + 6.2 tttcct Myf 560 571 - 9.03 aggcaggagcag CFI-USP 568 577 - 6.61 ggggtgaggc AGL3 576 585 + 6.23 ccaaaattgt Agamous 576 586 + 6.97 ccaaaattgtc Sox17 578 586 + 6.77 aaaattgtc SRY 581 589 - 6.08 tgagacaat Klf4 629 638 + 6.88 tagaagaggg Pax4 651 680 - 7.61 ggttcttttccgaacctccccactctccac ZNF42_1-4 659 664 + 7.08 tgggga Dorsal_1 669 680 - 6.73 ggttcttttccg Dorsal_1 670 681 - 6.43 gggttcttttcc Macho-1 676 684 - 6.1 agggggttc SPI1 683 688 - 6.46 gggaag HMG-IY 698 713 - 7.89 gtgcaaaagccataac NR2F1 702 715 + 7.13 tggcttttgcactc HNF4 702 714 - 8.76 agtgcaaaagcca Dof2 703 708 - 6.7 aaagcc MA0021 703 708 - 6.37 aaagcc MNB1A 704 708 - 6.5 aaagc PBF 704 708 - 6.46 aaagc Gfi 713 722 - 8.31 gaaatcagag Pax4 717 746 + 6.57 gatttcctgcccccccaaatctcacccctt E74A 719 725 - 7.2 caggaaa ELK1 719 728 - 6.67 gggcaggaaa c-ETS 719 724 + 6.43 tttcct SP1 720 729 - 6.55 ggggcaggaa Macho-1 724 732 - 6.38 gggggggca RREB1 729 748 + 8.84 ccccaaatctcaccccttct ARR10 731 738 - 7.08 agatttgg Gfi 732 741 + 7.92 caaatctcac ZNF42_5-13 738 747 - 7.26 gaaggggtga Gfi 747 756 - 7.05 ccaatctgag Dorsal_1 753 764 + 6.71 ttggggtttccc Dorsal_1 754 765 + 9.19 tggggtttcccc Dorsal_2 754 763 + 6.91 tggggtttcc REL 754 763 + 8.76 tggggtttcc NFKB1 754 764 + 7.48 tggggtttccc NFKB1 754 764 - 7.02 gggaaacccca RELA 754 763 + 9.22 tggggtttcc Dorsal_1 755 766 + 6.76 ggggtttcccca Dorsal_2 755 764 + 9.2 ggggtttccc NF-kappaB 755 764 + 9.36 ggggtttccc NF-kappaB 755 764 - 7.33 gggaaacccc NFKB1 755 765 + 9.41 ggggtttcccc NFKB1 755 765 - 8.66 ggggaaacccc RELA 755 764 + 7.31 ggggtttccc NF-kappaB 756 765 - 6.27 ggggaaaccc SPIB 760 766 - 6.27 tggggaa ZNF42_1-4 761 766 - 7.03 tgggga AGL3 764 773 + 6.4 ccaaaaagag Agamous 764 774 + 6.43 ccaaaaagaga Klf4 770 779 + 6.47 agagagaagg YY1 792 797 - 6.54 gccatc HMG-IY 831 846 + 7.51 gaagaaatgcaataaa Foxd3 849 860 + 6.82 ccttgttgtttt NF-Y 906 921 - 10.7 gccggccaatcgctgg Gfi 907 916 - 6.34 ccaatcgctg TFAP2A 916 924 + 6.44 gccggcgcc ABI4 916 925 - 9.02 cggcgccggc ABI4 918 927 + 7.6 cggcgccggt TCF11-MafG 926 931 - 6.35 catgac MAX 927 936 - 6.96 ggccacatga >NM_001554 (1000 bp) CLUSTER 1 Location: 41 to 968 Score: 6.75 TBP: 2.23 RREB1: 2.22 HAND1-TCF3: 1.05 FOXI1: 0.74 TEAD: 0.711 Foxd3: 0.629 SPIB: 0.574 HMG-IY: 0.57 Foxa2: 0.528 Staf: 0.513 Hunchback: 0.45 HMG-1: 0.427 deltaEF1: 0.426 Broad-complex_1: 0.408 Foxq1: 0.399 SP1: 0.383 NR2F1: 0.38 Klf4: 0.37 ZNF42_1-4: 0.296 Broad-complex_3: 0.279 SPI1: 0.274 PBF: 0.268 MNB1A: 0.265 Fos: 0.254 Dof2: 0.251 NFKB1: 0.248 Broad-complex_4: 0.232 NR3C1: 0.226 CREB1: 0.212 RELA: 0.207 ABI4: 0.202 ZNF42_5-13: 0.195 MA0021: 0.192 Pax4: 0.192 bZIP910: 0.184 Arnt-Ahr: 0.181 Prrx2: 0.173 FOXD1: 0.163 c-ETS: 0.159 HNF4: 0.155 ID1: 0.155 Bapx1: 0.15 Dorsal_2: 0.145 Pax6: 0.139 Macho-1: 0.138 Pax2: 0.134 Dorsal_1: 0.134 SRY: 0.133 SOX9: 0.133 MafB: 0.127 NF-kappaB: 0.12 GAMYB: 0.118 E74A: 0.118 MYB.ph3: 0.117 REL: 0.117 RUSH1-alfa: 0.116 TFAP2A: 0.116 TCF1: 0.102 En1: 0.102 cEBP: 0.101 Nkx2-5: 0.0981 YY1: 0.0957 SU_h: 0.0956 ELK1: 0.0872 HLF: 0.084 Pax5: 0.0759 GABPA: 0.0752 Gata1: 0.0738 Agamous: 0.0735 Ubx: 0.073 RUNX1: 0.0672 SQUA: 0.0664 Broad-complex_2: 0.0659 ESR1: 0.0657 GATA3: 0.064 Pbx: 0.0638 FOXL1: 0.0628 ARR10: 0.0627 Hox11-CTF1: 0.0595 TCF11-MafG: 0.0545 GATA2: 0.0495 FOXC1: 0.0489 E2F1: 0.0487 Chop-cEBP: 0.0461 FOXF2: 0.0431 CFI-USP: 0.0429 Spz1: 0.0413 Athb-1: 0.0373 Myb: 0.0372 Sox17: 0.0369 IRF1: 0.0365 Snail: 0.0349 Sox5: 0.0344 AGL3: 0.0312 Gfi: 0.029 Myf: 0.0268 Arnt: 0.0251 Mycn: 0.0214 bZIP911: 0.0171 RORA: 0.0142 MAX: 0.0127 USF1: 0.0117 NFIL3: 0.00987 Evi1: 0.00862 IRF2: 0.00828 MYC-MAX: 0.00753 ELK4: 0.00672 TAL1-TCF3: 0.0054 RXR-VDR: 0.00537 Ar: 0.00532 NHLH1: 0.00492 NF-Y: 0.00361 CF2-II: 0.00351 RORA1: 0.00264 TP53: 0.00242 Roaz: 0.00199 PPARG: 0.00198 SRF: 0.00175 ATHB5: 0.00167 T: 0.00164 MEF2A: 0.00147 PPARG-RXRA: 0.000133 NR1H2-RXR: 1.01e-05 GGAGAACTCCCCGCGTTCGTTTCCTCTcggacttccaacccaggcagtgggctggaactAAAGTGGGAACCTCCAAAAACAAACAAGTACAACatacCCAAAAGAGGGAAGGgctggaggagtgggggagacctctgcCTGGGAATTTGCCAGACGATGGGCAAGTTTCCCCCCGCCCCACCCCCCCCCCGCCTtTTCATTCATAAATGCCACTGtGGGTATTAATTTGCaattcacTGAACTTTGCTAATAAACATCAtgccAAAGCTTTGGGACTTGTTCCGAACACGCCtcttTGAAGTCCACaaataTTCCTGACTCAGagacacactcctcttccccgttctactctttcaacagataacttgcctctcaccttcgcTGTAAAAAAGCAAACAGCTcactgccTTCCCGGGTGAGGGCTTCAGTGGCtgcccggtcaactcgcatCACCAAACAAAACGACTTTTGTTCctccctctcaggtcctcccacccacccagtcCAGGCAAAGTTCTGAACTGGcccccctcgcccctcacgaccctccaactaccatcaccaccatcacgccccaaagaacccttcccaacataaGTCGTAATTTAAGGTGGAAAAAACGAACTGTTTTCTTGACGGGTCTGGGACacacacacacacacacacacacacacacacaccccccGAACTGTTTTCTTGACGGGTCTGGGAGACAGACacacacacagacacacacacacacacacacacacacacacacacacacacacacacacacacacaAAGGTGcaatggagccaggggaggcgcttggcagcagcccgcgccaaccAGCATTCCTGAGATGTTTGAGAATTCTGGAACGCGcagacagagccGACGTCACTGCAacacgCGGCGCCTCCgccggcCCGTATAAAAGGCGGGC NFKB1 41 51 - 7.04 gggagttctcc Staf 44 63 + 8.22 gaactccccgcgttcgtttc ZNF42_1-4 48 53 - 6.03 cgggga IRF1 53 64 - 6.23 ggaaacgaacgc GAMYB 55 64 - 6.87 ggaaacgaac E74A 60 66 - 6.14 gaggaaa c-ETS 60 65 + 6.97 tttcct SPIB 61 67 - 8.94 agaggaa MA0021 100 105 + 6.1 aaagtg SU_h 101 116 + 6.26 aagtgggaacctccaa Foxd3 117 128 - 8.27 acttgtttgttt FOXI1 117 128 - 9.24 acttgtttgttt Foxa2 117 128 - 7.96 acttgtttgttt HMG-1 125 133 - 7.05 gttgtactt Agamous 138 148 + 6.2 ccaaaagaggg Klf4 139 148 + 6.03 caaaagaggg Klf4 143 152 + 7.5 agagggaagg SPI1 146 151 + 6.36 gggaag Hox11-CTF1 179 192 - 6.03 tggcaaattcccag Hox11-CTF1 180 193 + 6.24 tgggaatttgccag NF-kappaB 181 190 + 6.86 gggaatttgc Pax4 181 210 - 7.03 ggaaacttgcccatcgtctggcaaattccc RELA 181 190 + 7.81 gggaatttgc HAND1-TCF3 187 196 - 8.25 cgtctggcaa ZNF42_5-13 195 204 + 6.02 cgatgggcaa NR2F1 197 210 - 6.49 ggaaacttgcccat Pax4 200 229 + 7.38 ggcaagtttccccccgccccaccccccccc Pax4 201 230 + 8.27 gcaagtttccccccgccccacccccccccc RREB1 209 228 + 6.33 ccccccgccccacccccccc RREB1 210 229 + 8.2 cccccgccccaccccccccc RREB1 211 230 + 11.5 ccccgccccacccccccccc RREB1 213 232 + 6.48 ccgccccaccccccccccgc RREB1 215 234 + 6.61 gccccaccccccccccgcct SP1 220 229 - 7.18 gggggggggt Pax6 236 249 + 6.42 ttcattcataaatg TBP 241 255 + 6.13 tcataaatgccactg FOXI1 257 268 + 6.51 gggtattaattt TCF1 257 270 + 6.81 gggtattaatttgc Prrx2 263 267 - 6.59 aatta NR2F1 278 291 + 8.86 tgaactttgctaat HNF4 278 290 - 6.77 ttagcaaagttca Broad-complex_4 288 298 + 6.29 taataaacatc FOXI1 288 299 - 8.01 tgatgtttatta Foxq1 289 299 - 9.09 tgatgtttatt FOXD1 290 297 + 6.58 ataaacat Dof2 304 309 + 6.54 aaagct MNB1A 304 308 + 6.52 aaagc PBF 304 308 + 6.48 aaagc Dof2 306 311 - 6.25 aaagct HMG-IY 307 322 - 8.11 gaacaagtcccaaagc MNB1A 307 311 - 6.08 aaagc PBF 307 311 - 6.03 aaagc SPI1 319 324 - 6.19 cggaac HMG-1 324 332 - 6.12 ggcgtgttc Dorsal_2 337 346 - 6.36 gtggacttca SPIB 352 358 - 6.13 tcaggaa Fos 355 362 + 6.4 ctgactca Fos 356 363 - 7.41 ctgagtca Dorsal_1 423 434 - 6.09 tgcttttttaca FOXD1 424 431 + 7.4 gtaaaaaa HMG-IY 424 439 + 7.69 gtaaaaaagcaaacag Foxd3 426 437 - 6.34 gtttgctttttt Dof2 429 434 + 6.94 aaagca MA0021 429 434 + 6.46 aaagca MNB1A 429 433 + 6.43 aaagc PBF 429 433 + 6.38 aaagc Foxa2 430 441 - 7.45 agctgtttgctt Pax6 449 462 + 6.23 ttcccgggtgaggg TFAP2A 455 463 - 6.44 gccctcacc Bapx1 464 472 + 6.24 ttcagtggc FOXI1 491 502 - 6.1 ttttgtttggtg Broad-complex_3 494 504 + 6.42 caaacaaaacg MA0021 504 509 - 6.58 aaagtc SOX9 506 514 - 7.09 gaacaaaag HNF4 546 558 + 6.21 caggcaaagttct NR3C1 548 565 + 7.33 ggcaaagttctgaactgg PBF 551 555 + 6.22 aaagt HMG-1 638 646 + 7.77 gtcgtaatt Prrx2 642 646 - 7.34 aatta HMG-IY 645 660 + 6.84 tttaaggtggaaaaaa deltaEF1 648 653 - 8.02 cacctt Foxd3 654 665 - 6.38 gttcgttttttc NR3C1 655 672 - 6.74 gaaaacagttcgtttttt Broad-complex_1 662 675 - 6.82 caagaaaacagttc MYB.ph3 662 670 + 7.54 gaactgttt Foxd3 663 674 + 8.77 aactgttttctt Foxa2 663 674 + 8.54 aactgttttctt Broad-complex_4 664 674 - 6.69 aagaaaacagt Pax5 664 683 - 6.68 agacccgtcaagaaaacagt SRY 664 672 - 6.87 gaaaacagt FOXD1 665 672 - 6.23 gaaaacag Klf4 665 674 - 6.1 aagaaaacag Broad-complex_3 666 676 - 7.56 tcaagaaaaca Hunchback 666 675 - 8.31 caagaaaaca Pbx 668 679 - 6.63 ccgtcaagaaaa CREB1 669 680 + 6.96 tttcttgacggg Hunchback 670 679 - 6.62 ccgtcaagaa SP1 678 687 + 7.62 gggtctggga HAND1-TCF3 679 688 + 8.42 ggtctgggac Broad-complex_1 726 739 - 8.05 caagaaaacagttc MYB.ph3 726 734 + 8.14 gaactgttt MYB.ph3 726 734 - 6.32 aaacagttc Foxq1 727 737 + 6.29 aactgttttct Foxd3 727 738 + 9.93 aactgttttctt Foxa2 727 738 + 9.71 aactgttttctt Broad-complex_4 728 738 - 8.1 aagaaaacagt Pax5 728 747 - 8.24 agacccgtcaagaaaacagt FOXF2 728 741 - 6.99 gtcaagaaaacagt SRY 728 736 - 7.87 gaaaacagt Sox5 728 734 - 6.32 aaacagt FOXD1 729 736 - 7.48 gaaaacag Klf4 729 738 - 7.76 aagaaaacag Broad-complex_3 730 740 - 8.9 tcaagaaaaca Dof2 730 735 - 6.1 aaaaca Evi1 730 743 - 6.74 ccgtcaagaaaaca Hunchback 730 739 - 9.79 caagaaaaca Staf 730 749 - 6.56 ccagacccgtcaagaaaaca HMG-1 731 739 + 7.02 gttttcttg Hunchback 731 740 - 6.82 tcaagaaaac RUSH1-alfa 731 738 + 7.01 gttttctt Pbx 732 743 - 7.6 ccgtcaagaaaa CREB1 733 744 + 7.55 tttcttgacggg E74A 733 739 - 6.01 caagaaa Hunchback 734 743 - 7.16 ccgtcaagaa ESR1 741 758 - 6.26 gtctgtctcccagacccg SP1 742 751 + 7.1 gggtctggga HAND1-TCF3 743 752 + 8.66 ggtctgggag ZNF42_5-13 744 753 + 6.14 gtctgggaga deltaEF1 824 829 - 7.15 cacctt TEAD 873 884 + 9.42 agcattcctgag E74A 876 882 - 6.94 caggaat c-ETS 876 881 + 6.15 attcct SPIB 877 883 - 8.25 tcaggaa Pax5 880 899 - 6.35 agaattctcaaacatctcag RUSH1-alfa 882 889 - 6.29 aacatctc ARR10 883 890 + 6.02 agatgttt Broad-complex_1 885 898 + 7.52 atgtttgagaattc HMG-IY 885 900 - 6.71 cagaattctcaaacat Broad-complex_1 886 899 - 8.58 agaattctcaaaca HLF 886 897 + 6.91 tgtttgagaatt SU_h 887 902 + 6.19 gtttgagaattctgga Staf 888 907 - 8.82 cgcgttccagaattctcaaa cEBP 888 899 + 6.55 tttgagaattct HAND1-TCF3 895 904 + 7.18 attctggaac CREB1 919 930 - 7.43 tgcagtgacgtc bZIP910 920 926 - 7.63 gtgacgt Pax2 921 928 + 6.12 cgtcactg ABI4 936 945 + 6.93 cggcgcctcc Hunchback 952 961 + 6.02 ccgtataaaa TBP 954 968 + 11 gtataaaaggcgggc >NM_002037 (1000 bp) CLUSTER 1 Location: 7 to 659 Score: 6.23 Myf: 2.71 RREB1: 2.22 Chop-cEBP: 1.28 SQUA: 0.704 Athb-1: 0.547 Gfi: 0.456 ZNF42_1-4: 0.437 Hunchback: 0.378 Snail: 0.362 SPIB: 0.354 Klf4: 0.349 SU_h: 0.293 NF-Y: 0.28 Foxd3: 0.265 E74A: 0.264 Evi1: 0.236 c-ETS: 0.23 ZNF42_5-13: 0.208 ELK1: 0.203 FOXI1: 0.201 SPI1: 0.198 ID1: 0.197 NR3C1: 0.195 Broad-complex_4: 0.192 HMG-IY: 0.19 SP1: 0.19 Dof2: 0.188 MNB1A: 0.184 Sox5: 0.172 PBF: 0.158 Broad-complex_3: 0.154 GATA3: 0.151 HNF4: 0.146 Macho-1: 0.143 MA0021: 0.139 Pax4: 0.136 Broad-complex_2: 0.134 deltaEF1: 0.131 HMG-1: 0.119 RELA: 0.119 RUSH1-alfa: 0.115 SOX9: 0.114 Broad-complex_1: 0.113 Nkx2-5: 0.107 Staf: 0.106 TCF11-MafG: 0.103 IRF1: 0.0941 En1: 0.094 YY1: 0.0924 GATA2: 0.092 Gata1: 0.0912 Pax2: 0.0902 Bapx1: 0.0878 Pax5: 0.0843 HAND1-TCF3: 0.0811 Arnt: 0.0783 SRY: 0.0771 Ubx: 0.0756 Prrx2: 0.0742 FOXC1: 0.0733 TBP: 0.0687 Spz1: 0.068 GAMYB: 0.067 Sox17: 0.0668 MafB: 0.0665 Myb: 0.0657 ELK4: 0.0654 REL: 0.0643 FOXL1: 0.0624 Dorsal_1: 0.0606 ABI4: 0.0589 Pbx: 0.0572 Agamous: 0.0561 GABPA: 0.0552 E2F1: 0.0512 ARR10: 0.05 MYB.ph3: 0.0481 Foxa2: 0.0445 RUNX1: 0.0417 ATHB5: 0.0398 TFAP2A: 0.0383 cEBP: 0.034 NR2F1: 0.0315 TEAD: 0.0302 CFI-USP: 0.0284 Dorsal_2: 0.0283 Fos: 0.0272 Mycn: 0.026 FOXD1: 0.0257 AGL3: 0.0243 NFKB1: 0.0229 HLF: 0.0209 Arnt-Ahr: 0.0199 NHLH1: 0.0192 FOXF2: 0.0166 Hox11-CTF1: 0.0141 MYC-MAX: 0.0136 Foxq1: 0.0135 USF1: 0.0134 T: 0.013 MAX: 0.0122 NF-kappaB: 0.0101 NFIL3: 0.00999 Ar: 0.0094 RORA: 0.00933 IRF2: 0.00924 TCF1: 0.0086 Pax6: 0.00688 MEF2A: 0.00498 CREB1: 0.00484 ESR1: 0.0047 CF2-II: 0.00455 TAL1-TCF3: 0.003 bZIP910: 0.00287 TP53: 0.00158 RORA1: 0.00154 RXR-VDR: 0.00146 PPARG: 0.000674 PPARG-RXRA: 0.00062 SRF: 0.000517 bZIP911: 0.000321 Roaz: 0.000116 NR1H2-RXR: 3.77e-05 TCAGGAAGccaaagtGTTTCTTTTTATGAAGTTACATCCTGCCATAGaaaagctggataggaaataaagacCGATGCACTCCCAACTGTATACTAAACCggCAATTATTTcatcaagggaaatatgagcaaaagCTCAGATTCAgtgaaggggaaaaaaacatgagaagtttgaatgTTATGAGAAACCAAAGACAACCAATGACTACAATTAAacgaGGTTTTTTGGGGGTGGGGCGGGGAATGTAcgaaCAAATCTCTGtcaTTTCAGGTTCcttagTCGCCGCTTGGCCCCTCCCCCTATttcagtaatacttcctccagacttttgcTAGAAAAAAAATATAAATGAGTGTCCGCAGAAATAGGGGACTGAtaaaatgatcctaatctccttctcctcCTCATTGTTATTTGTTGtgcgtttcCACGTTTCAGGACAGGATTCTACTttgctccgtactcttttcagtttgatcaaagaaaacgctgctaTCACCGCCCAattttccatttcatcctctcaccctcAAATGAAAAGacaccagaAAGGCAAGATAGCCctgtctcgAGGCAGTTTCCCATGGTTTTGGGGGAATGGCAGGTGccaatCTGCAGCAGCAGCTGCAACCTTCCGCAAAGCGGAAACTGCAG SPIB 7 13 + 6.06 tcaggaa E74A 8 14 + 7.05 caggaag HMG-IY 22 37 - 6.14 cttcataaaaagaaac SQUA 22 35 - 9.43 tcataaaaagaaac Hunchback 26 35 - 6.82 tcataaaaag Staf 34 53 + 6.25 gaagttacatcctgccatag Chop-cEBP 78 89 + 10.2 cgatgcactccc Bapx1 81 89 - 7.25 gggagtgca Myb 89 96 - 6.3 tacagttg Broad-complex_3 95 105 + 6.29 tatactaaacc Athb-1 108 115 + 8.89 caattatt Nkx2-5 108 114 - 6.04 ataattg ATHB5 108 116 + 6.06 caattattt Gfi 141 150 - 6.37 tgaatctgag SU_h 184 199 + 6.08 ttatgagaaaccaaag NF-Y 199 214 + 7.75 gacaaccaatgactac Nkx2-5 214 220 - 6.34 ttaattg RREB1 225 244 - 7.6 cgccccacccccaaaaaacc Hunchback 226 235 - 6.53 cccaaaaaac Hunchback 227 236 - 7.64 ccccaaaaaa RREB1 228 247 - 12.1 ccccgccccacccccaaaaa Macho-1 231 239 + 6.35 ttgggggtg SP1 239 248 + 8.64 ggggcgggga TEAD 242 253 - 7.18 tacattccccgc ZNF42_1-4 243 248 + 6.71 cgggga Gfi 258 267 + 8.14 caaatctctg ELK1 271 280 - 6.89 gaacctgaaa NF-Y 286 301 - 6.33 aggggccaagcggcga HNF4 287 299 - 6.46 gggccaagcggcg HNF4 294 306 - 6.6 gggggaggggcca Klf4 298 307 - 6.6 agggggaggg Klf4 299 308 - 6.36 tagggggagg ZNF42_5-13 300 309 - 6.92 atagggggag ZNF42_1-4 301 306 - 6.61 ggggga Broad-complex_4 338 348 + 7.48 tagaaaaaaaa Hunchback 338 347 + 6.77 tagaaaaaaa Hunchback 339 348 + 6.2 agaaaaaaaa Hunchback 340 349 + 7.7 gaaaaaaaat Foxd3 342 353 - 8.1 ttatattttttt TBP 348 362 + 6.52 atataaatgagtgtc Staf 362 381 - 6.28 tcagtcccctatttctgcgg Broad-complex_2 368 375 - 6.34 ccctattt ZNF42_1-4 372 377 + 7.59 agggga Sox17 409 417 + 6.38 ctcattgtt Sox5 412 418 - 7.27 taacaat FOXI1 414 425 + 7.52 tgttatttgttg Arnt 434 439 - 6.33 aacgtg NR3C1 440 457 - 7.28 agtagaatcctgtcctga SP1 501 510 - 6.21 tgggcggtga Klf4 537 546 + 6.38 aaatgaaaag Evi1 555 568 + 7.64 aaggcaagatagcc GATA3 561 566 + 6.34 agatag SU_h 577 592 - 7.96 ccatgggaaactgcct RELA 578 587 + 6.95 ggcagtttcc SOX9 587 595 - 6.85 aaaccatgg Pax5 590 609 + 7.2 tggttttgggggaatggcag ZNF42_5-13 594 603 + 6.38 tttgggggaa Macho-1 595 603 + 6.32 ttgggggaa Klf4 596 605 + 6.02 tgggggaatg ZNF42_1-4 596 601 + 6.05 tggggg ZNF42_1-4 597 602 + 7.41 ggggga Snail 607 612 + 8.56 caggtg deltaEF1 607 612 - 7.49 cacctg Myf 618 629 + 7.7 ctgcagcagcag NHLH1 621 632 + 6.16 cagcagcagctg Myf 621 632 + 11.5 cagcagcagctg Myf 621 632 - 8.22 cagctgctgctg NHLH1 624 635 + 6.66 cagcagctgcaa Myf 624 635 + 7.29 cagcagctgcaa Spz1 629 639 - 6.18 aaggttgcagc SPI1 637 642 - 6.28 cggaag SPIB 638 644 - 6.57 tgcggaa ID1 641 652 - 6.09 ttccgctttgcg MA0021 644 649 + 6.58 aaagcg ELK1 644 653 + 6.01 aaagcggaaa SPIB 646 652 + 7.82 agcggaa E74A 647 653 + 6.29 gcggaaa Myf 648 659 + 7.81 cggaaactgcag c-ETS 648 653 - 6.02 tttccg >NM_003633 (1000 bp) CLUSTER 1 Location: 56 to 378 Score: 7.1 Hox11-CTF1: 3.45 MYC-MAX: 1.88 RREB1: 1.35 NF-Y: 1.21 HNF4: 0.749 Hunchback: 0.338 Broad-complex_4: 0.328 HMG-IY: 0.2 MA0021: 0.199 Broad-complex_1: 0.185 Dof2: 0.172 Myf: 0.158 ZNF42_1-4: 0.155 Broad-complex_3: 0.147 ID1: 0.128 PBF: 0.124 ABI4: 0.121 Klf4: 0.121 MNB1A: 0.118 TFAP2A: 0.108 IRF1: 0.106 Nkx2-5: 0.105 deltaEF1: 0.0731 PPARG: 0.0631 SP1: 0.0602 c-ETS: 0.0587 HAND1-TCF3: 0.0552 SPIB: 0.0509 MafB: 0.05 Bapx1: 0.0475 En1: 0.0456 Macho-1: 0.0441 TEAD: 0.0435 Broad-complex_2: 0.0391 RUSH1-alfa: 0.0389 ZNF42_5-13: 0.0375 Ubx: 0.0361 TBP: 0.0358 Chop-cEBP: 0.0329 FOXL1: 0.0318 FOXD1: 0.0315 GATA3: 0.0306 Gata1: 0.0292 Pax2: 0.0292 RXR-VDR: 0.0281 Mycn: 0.0281 Arnt: 0.0281 Fos: 0.0277 E74A: 0.0274 Arnt-Ahr: 0.0262 TP53: 0.0254 NR2F1: 0.0239 HMG-1: 0.0227 YY1: 0.0225 FOXI1: 0.0222 USF1: 0.0222 MAX: 0.022 Staf: 0.022 GATA2: 0.022 SPI1: 0.0208 Foxq1: 0.0196 ELK1: 0.0192 Dorsal_2: 0.019 REL: 0.0188 SRY: 0.0177 cEBP: 0.0176 MYB.ph3: 0.0176 Gfi: 0.0175 Pax5: 0.0165 Dorsal_1: 0.0153 ESR1: 0.0153 RELA: 0.0144 Prrx2: 0.0142 GABPA: 0.0121 FOXC1: 0.0107 ARR10: 0.0104 NFKB1: 0.0103 Spz1: 0.00913 GAMYB: 0.00861 Snail: 0.00818 E2F1: 0.00798 NHLH1: 0.00775 Pax4: 0.00753 SQUA: 0.007 Myb: 0.00581 TCF11-MafG: 0.00535 NF-kappaB: 0.00509 Pbx: 0.00506 SOX9: 0.00484 RORA: 0.00482 Agamous: 0.00435 CREB1: 0.00395 NR3C1: 0.00393 FOXF2: 0.00372 RUNX1: 0.0033 HLF: 0.00311 ELK4: 0.0028 Foxa2: 0.00261 Sox17: 0.00254 IRF2: 0.00247 Sox5: 0.00216 Athb-1: 0.00194 Roaz: 0.00176 Ar: 0.00168 CFI-USP: 0.00161 TCF1: 0.00144 SU_h: 0.00101 CF2-II: 0.000998 Foxd3: 0.000971 NFIL3: 0.000904 Pax6: 0.000761 AGL3: 0.000753 T: 0.000678 bZIP910: 0.000434 Evi1: 0.000366 MEF2A: 0.000243 TAL1-TCF3: 0.000134 bZIP911: 0.000132 ATHB5: 0.000109 RORA1: 7.88e-05 NR1H2-RXR: 1.16e-05 SRF: 8.12e-06 PPARG-RXRA: 5.73e-06 cCATTTCTTTACTGaACTCCAAACTAACACCACCGAGCGATAAAAAACAGGAGAAGGTGatggaggcttaatcgctaggagaGGAGGCGGCGtggctgcTGCTTTGAGGAGTTCACTTTGAATCAAgcggccGCGGCGATTGGCTGAAAAGCACGTGGTGcgcgccccgcaggactgcgccccggctgcccCTGCAGTCGCCTggcttAGGGCAGAGTCCAgccgggggtgccgcacccacTGGGGAgTGGGGAgggaggacacATAGGAAAtgcctggggctggagtctcTTTGGCTCTCTGCCAGCAAGAAACTTAAACGT Klf4 57 66 - 6.37 taaagaaatg Broad-complex_4 59 69 - 8.15 cagtaaagaaa Hunchback 60 69 - 6.79 cagtaaagaa RREB1 71 90 + 6.98 actccaaactaacaccaccg RREB1 72 91 + 9.91 ctccaaactaacaccaccga FOXI1 76 87 - 6.44 tggtgttagttt Hunchback 92 101 + 6.56 gcgataaaaa Hunchback 93 102 + 8.18 cgataaaaaa TBP 93 107 + 6.35 cgataaaaaacagga ID1 93 104 - 7.4 tgttttttatcg Broad-complex_1 95 108 + 7.94 ataaaaaacaggag deltaEF1 109 114 - 6.22 cacctt ABI4 138 147 - 6.63 cgccgcctcc Dof2 155 160 - 7.4 aaagca MA0021 155 160 - 6.93 aaagca MNB1A 156 160 - 6.63 aaagc PBF 156 160 - 6.59 aaagc RXR-VDR 156 170 + 6.25 gctttgaggagttca PPARG 162 181 - 6.36 ttgattcaaagtgaactcct HNF4 167 179 - 6.1 gattcaaagtgaa Bapx1 167 175 - 6.04 caaagtgaa MA0021 169 174 - 7.38 aaagtg MNB1A 170 174 - 6.26 aaagt PBF 170 174 - 6.68 aaagt NF-Y 188 203 - 9.65 ttcagccaatcgccgc Dorsal_1 199 210 - 6.43 cgtgcttttcag Dof2 203 208 + 7.53 aaagca MA0021 203 208 + 7.06 aaagca MNB1A 203 207 + 6.66 aaagc PBF 203 207 + 6.61 aaagc MAX 204 213 + 7.54 aagcacgtgg MYC-MAX 204 214 + 11.6 aagcacgtggt MYC-MAX 205 215 - 6.52 caccacgtgct MAX 206 215 - 6.42 caccacgtgc USF1 206 212 - 6.01 cacgtgc Arnt 207 212 + 7.45 cacgtg Arnt 207 212 - 7.45 cacgtg USF1 207 213 + 7.8 cacgtgg Mycn 207 212 + 7.53 cacgtg Mycn 207 212 - 7.53 cacgtg Myf 247 258 - 6.8 aggcgactgcag HNF4 264 276 + 8.89 agggcagagtcca ZNF42_1-4 297 302 + 6.22 tgggga ZNF42_1-4 304 309 + 6.32 tgggga SPIB 320 326 + 6.17 ataggaa c-ETS 322 327 - 6.38 tttcct E2F1 347 354 + 6.01 tttggctc Hox11-CTF1 348 361 - 12.3 tggcagagagccaa Hox11-CTF1 349 362 + 6.98 tggctctctgccag HMG-IY 363 378 + 7.56 caagaaacttaaacgt Broad-complex_3 366 376 + 7.05 gaaacttaaac IRF1 366 377 + 6.74 gaaacttaaacg Nkx2-5 368 374 - 6.54 ttaagtt >NM_021643 (1000 bp) CLUSTER 1 Location: 553 to 728 Score: 8.35 Roaz: 2.09 Pbx: 1.55 Chop-cEBP: 0.417 FOXF2: 0.377 FOXD1: 0.224 HMG-IY: 0.199 REL: 0.113 SRY: 0.0994 FOXL1: 0.066 ABI4: 0.0603 c-ETS: 0.0598 RUSH1-alfa: 0.0576 Dorsal_2: 0.0571 TFAP2A: 0.0554 Broad-complex_3: 0.0506 Broad-complex_4: 0.0488 MafB: 0.0453 En1: 0.0416 YY1: 0.0405 Gfi: 0.0374 Fos: 0.0369 ZNF42_1-4: 0.0366 SPI1: 0.0356 HAND1-TCF3: 0.035 GATA3: 0.0303 E74A: 0.025 Gata1: 0.0211 GATA2: 0.0202 ARR10: 0.0194 IRF1: 0.019 Foxa2: 0.0176 Pax4: 0.0154 RELA: 0.0152 Pax2: 0.0149 Sox5: 0.0148 Dorsal_1: 0.0117 SOX9: 0.0108 NHLH1: 0.0107 Myf: 0.0104 Broad-complex_2: 0.0101 cEBP: 0.00949 Nkx2-5: 0.00949 Macho-1: 0.00907 NR3C1: 0.0087 Ubx: 0.0083 Myb: 0.00741 Prrx2: 0.00716 GABPA: 0.00714 Broad-complex_1: 0.00682 SP1: 0.00677 MNB1A: 0.00616 Dof2: 0.0061 ID1: 0.00606 Bapx1: 0.00545 Spz1: 0.00536 NFKB1: 0.00517 NF-kappaB: 0.00499 Athb-1: 0.00495 TEAD: 0.0047 Foxd3: 0.0047 E2F1: 0.00467 Arnt-Ahr: 0.00454 FOXC1: 0.00436 ELK1: 0.0039 TCF11-MafG: 0.00372 PBF: 0.00371 GAMYB: 0.00348 HLF: 0.00296 Hunchback: 0.00295 Klf4: 0.00275 TCF1: 0.00259 SPIB: 0.00246 deltaEF1: 0.00245 Sox17: 0.00229 HNF4: 0.00225 MA0021: 0.00221 Pax5: 0.00219 ZNF42_5-13: 0.00208 RUNX1: 0.00206 MYB.ph3: 0.00177 CF2-II: 0.00164 HMG-1: 0.00143 CREB1: 0.00142 Ar: 0.00138 ELK4: 0.00136 Foxq1: 0.00132 Snail: 0.00131 FOXI1: 0.00125 Agamous: 0.000693 NFIL3: 0.000689 RXR-VDR: 0.000611 MAX: 0.000607 SU_h: 0.000599 IRF2: 0.000543 NR2F1: 0.000509 CFI-USP: 0.000446 Arnt: 0.000427 Mycn: 0.000415 RREB1: 0.000305 USF1: 0.000288 SQUA: 0.000208 bZIP910: 0.000194 ESR1: 0.000181 RORA: 0.000175 AGL3: 0.00017 Staf: 0.000165 TBP: 0.000163 MYC-MAX: 0.000162 PPARG: 0.00014 ATHB5: 0.000103 Pax6: 8.51e-05 TAL1-TCF3: 8.01e-05 NF-Y: 5.31e-05 bZIP911: 3.23e-05 RORA1: 2.74e-05 Evi1: 2.24e-05 MEF2A: 2.09e-05 Hox11-CTF1: 1.2e-05 SRF: 5.01e-06 T: 4.1e-06 PPARG-RXRA: 1.79e-06 NR1H2-RXR: 1.3e-06 TP53: 1.1e-06 GACACCCAGGGTGCTgcgcccggggccccGGGCCGCGGAAGGATATTTCACTTTGTTTACCTCCCCGGCCgggcgagggagctgcgaggccggtgctggcgcccccggcacggAGCTGCAATGGCagcggcgcggggagccgcccgaggactggcagcggcggGGCTGATTGATGG Roaz 553 567 - 10.7 agcaccctgggtgtc Pax4 582 611 - 8.5 taaacaaagtgaaatatccttccgcggccc Pax4 586 615 - 7.73 gaggtaaacaaagtgaaatatccttccgcg Pax4 587 616 - 6.53 ggaggtaaacaaagtgaaatatccttccgc Pax4 588 617 - 7.09 gggaggtaaacaaagtgaaatatccttccg SPI1 588 593 + 6.08 cggaag NR3C1 588 605 + 8.15 cggaaggatatttcactt Pax4 589 618 + 7.18 ggaaggatatttcactttgtttacctcccc Pax4 589 618 - 7.81 ggggaggtaaacaaagtgaaatatccttcc NR3C1 589 606 + 8.98 ggaaggatatttcacttt En1 590 600 + 6.34 gaaggatattt Pax4 590 619 + 9.7 gaaggatatttcactttgtttacctccccg NR3C1 590 607 - 6.59 caaagtgaaatatccttc En1 591 601 + 6.39 aaggatatttc Pax4 591 620 + 8.9 aaggatatttcactttgtttacctccccgg Pax5 592 611 - 6.58 taaacaaagtgaaatatcct Pax4 592 621 + 8.66 aggatatttcactttgtttacctccccggc c-ETS 592 597 - 7.36 tatcct REL 592 601 + 6.77 aggatatttc Ar 593 614 - 7.1 aggtaaacaaagtgaaatatcc Dorsal_2 593 602 + 7.73 ggatatttca GATA2 593 597 + 6.21 ggata Pax4 593 622 + 10.9 ggatatttcactttgtttacctccccggcc REL 593 602 + 7.29 ggatatttca REL 593 602 - 7.46 tgaaatatcc RELA 593 602 - 6.25 tgaaatatcc NR3C1 593 610 + 7.57 ggatatttcactttgttt Ar 594 615 + 6.03 gatatttcactttgtttacctc Broad-complex_1 594 607 - 6.41 caaagtgaaatatc Chop-cEBP 594 605 - 12.1 aagtgaaatatc HMG-IY 594 609 - 10.1 aacaaagtgaaatatc TEAD 594 605 + 7.11 gatatttcactt REL 594 603 - 6.21 gtgaaatatc cEBP 594 605 - 8.45 aagtgaaatatc Broad-complex_4 595 605 - 11.4 aagtgaaatat Pax5 595 614 - 9.33 aggtaaacaaagtgaaatat En1 595 605 - 8.37 aagtgaaatat HMG-IY 595 610 - 14.1 aaacaaagtgaaatat PPARG 595 614 + 6.92 atatttcactttgtttacct NR3C1 595 612 - 10.5 gtaaacaaagtgaaatat Ar 596 617 + 8.95 tatttcactttgtttacctccc Broad-complex_1 596 609 - 10.4 aacaaagtgaaata En1 596 606 - 6.9 aaagtgaaata FOXL1 596 603 - 7.64 gtgaaata HLF 596 607 + 6.86 tatttcactttg HMG-IY 596 611 - 7.51 taaacaaagtgaaata IRF1 596 607 - 11.7 caaagtgaaata IRF2 596 613 - 7.91 ggtaaacaaagtgaaata Staf 596 615 + 6.88 tatttcactttgtttacctc RUSH1-alfa 596 603 + 6.84 tatttcac ID1 596 607 + 8.12 tatttcactttg Broad-complex_3 597 607 - 6.26 caaagtgaaat HMG-IY 597 612 - 9.67 gtaaacaaagtgaaat IRF2 597 614 - 6.13 aggtaaacaaagtgaaat Pax6 597 610 + 6.39 atttcactttgttt RXR-VDR 597 611 + 8.33 atttcactttgttta SQUA 597 610 - 6.93 aaacaaagtgaaat NR3C1 597 614 - 7.36 aggtaaacaaagtgaaat ELK1 598 607 - 6.35 caaagtgaaa Pax2 598 605 + 7.19 tttcactt cEBP 598 609 + 6.33 tttcactttgtt ID1 598 609 + 8.57 tttcactttgtt Broad-complex_4 599 609 - 6.49 aacaaagtgaa FOXI1 599 610 + 6.83 ttcactttgttt HMG-IY 599 614 - 6.13 aggtaaacaaagtgaa HNF4 599 611 - 7.21 taaacaaagtgaa Bapx1 599 607 - 7.73 caaagtgaa Broad-complex_4 600 610 - 6.33 aaacaaagtga MAX 600 609 - 6.29 aacaaagtga Broad-complex_3 601 611 - 12.3 taaacaaagtg Dof2 601 606 - 6.17 aaagtg MA0021 601 606 - 8.45 aaagtg Sox17 601 609 + 7.27 cactttgtt Broad-complex_1 602 615 - 9.06 gaggtaaacaaagt En1 602 612 + 6.55 actttgtttac Klf4 602 611 - 7.44 taaacaaagt MNB1A 602 606 - 7.66 aaagt PBF 602 606 - 8.08 aaagt SOX9 602 610 - 8.23 aaacaaagt SU_h 602 617 - 6.17 gggaggtaaacaaagt Foxq1 603 613 + 7.2 ctttgtttacc Foxd3 603 614 + 9.29 ctttgtttacct Foxa2 603 614 + 10.8 ctttgtttacct ID1 603 614 + 7.69 ctttgtttacct Broad-complex_4 604 614 - 11.2 aggtaaacaaa CREB1 604 615 + 7.47 tttgtttacctc FOXF2 604 617 - 13.5 gggaggtaaacaaa FOXL1 604 611 - 7.26 taaacaaa GAMYB 604 613 - 7.24 ggtaaacaaa SRY 604 612 - 12.4 gtaaacaaa Sox5 604 610 - 8.33 aaacaaa REL 604 613 + 6.02 tttgtttacc Spz1 604 614 - 7.55 aggtaaacaaa FOXD1 605 612 - 13.1 gtaaacaa Hunchback 605 614 - 6.48 aggtaaacaa RUSH1-alfa 608 615 + 7.66 tttacctc Chop-cEBP 666 677 + 8.28 agctgcaatggc YY1 672 677 - 6.24 gccatt Gfi 716 725 - 8.2 tcaatcagcc Pbx 717 728 - 11.4 ccatcaatcagc MafB 717 724 + 7.65 gctgattg Fos 718 725 + 6.14 ctgattga Gata1 719 724 + 6.73 tgattg GATA2 719 723 + 6.4 tgatt GATA3 719 724 + 8.02 tgattg Nkx2-5 719 725 - 6.45 tcaatca SOX9 719 727 - 7.03 catcaatca Fos 719 726 - 8.26 atcaatca Sox5 721 727 - 7.03 catcaat >NM_005794 (1000 bp) CLUSTER 1 Location: 707 to 938 Score: 7.32 NF-Y: 10.6 Ar: 0.321 ZNF42_1-4: 0.083 MYB.ph3: 0.0714 MafB: 0.066 Gfi: 0.0658 GATA3: 0.0634 Pbx: 0.0396 PBF: 0.0338 FOXL1: 0.0332 ID1: 0.0307 Dof2: 0.0272 Gata1: 0.0267 SRY: 0.0242 MNB1A: 0.023 Pax4: 0.0224 FOXC1: 0.0223 cEBP: 0.0219 Sox5: 0.0214 ARR10: 0.021 YY1: 0.0205 HAND1-TCF3: 0.0172 MA0021: 0.017 SP1: 0.0158 Broad-complex_1: 0.013 Broad-complex_4: 0.012 SOX9: 0.0114 RUSH1-alfa: 0.0114 GATA2: 0.0109 Pax2: 0.0104 Hunchback: 0.0102 Macho-1: 0.0098 GAMYB: 0.0096 Snail: 0.00937 Sox17: 0.00934 En1: 0.00933 ESR1: 0.00927 Broad-complex_2: 0.00906 Klf4: 0.00903 SU_h: 0.00873 Foxd3: 0.00857 Agamous: 0.00748 c-ETS: 0.007 HMG-1: 0.00687 deltaEF1: 0.0068 Foxq1: 0.00662 Broad-complex_3: 0.00657 Athb-1: 0.00656 NR3C1: 0.0065 Ubx: 0.00647 ZNF42_5-13: 0.00604 Bapx1: 0.00594 HMG-IY: 0.00585 TBP: 0.00496 Staf: 0.00491 Dorsal_2: 0.00452 SPIB: 0.00446 TCF1: 0.00443 AGL3: 0.0043 HNF4: 0.0043 TAL1-TCF3: 0.00421 FOXD1: 0.00401 SPI1: 0.00397 CF2-II: 0.00357 Nkx2-5: 0.00356 Pax5: 0.0035 TCF11-MafG: 0.00333 Foxa2: 0.00312 FOXI1: 0.0031 E2F1: 0.00271 Dorsal_1: 0.00257 Fos: 0.00256 Arnt-Ahr: 0.00246 ATHB5: 0.0024 RXR-VDR: 0.00203 NR2F1: 0.00193 Chop-cEBP: 0.00185 REL: 0.00152 Prrx2: 0.00148 GABPA: 0.00145 Myb: 0.00139 ELK1: 0.00138 CREB1: 0.00134 RUNX1: 0.00132 SQUA: 0.00112 TEAD: 0.00102 ABI4: 0.0009 E74A: 0.00086 HLF: 0.00083 Myf: 0.000775 Spz1: 0.000714 MYC-MAX: 0.000653 Hox11-CTF1: 0.000602 FOXF2: 0.000585 MAX: 0.000545 NHLH1: 0.000499 Mycn: 0.000466 SRF: 0.00046 Arnt: 0.000458 RORA: 0.000438 TFAP2A: 0.000398 RELA: 0.000379 CFI-USP: 0.000353 Pax6: 0.000319 IRF1: 0.000286 IRF2: 0.000279 USF1: 0.000258 bZIP911: 0.000237 RREB1: 0.000236 NFIL3: 0.000215 MEF2A: 0.000197 Evi1: 0.000139 RORA1: 0.000129 ELK4: 0.0001 NF-kappaB: 9.41e-05 Roaz: 7.09e-05 NFKB1: 5.92e-05 T: 4.54e-05 bZIP910: 3.43e-05 PPARG: 1.71e-05 NR1H2-RXR: 8.97e-06 PPARG-RXRA: 3.08e-06 TP53: 2.6e-06 ATGCACCAATCAGCAATCTGTGTCTAGCCAATCTGGTGGGGACTTGGAGAACTTTTgtgtctagctaaaggattgtaaATGCACCAATCAGCACtctgtgtctagctaaaggtttgtaaATGCACCAATCAGCACtctgtcaaaACGGACCAATCAGCTCtctgtaaaACAGACCAATCAGCTCtctgtaaaATGGACCAATCAGCTCtccataaaATGGACCAATCAGCAG NF-Y 707 722 + 10.6 atgcaccaatcagcaa Pbx 709 720 + 6.35 gcaccaatcagc Gfi 712 721 + 6.41 ccaatcagca MafB 713 720 - 6.16 gctgattg Gfi 719 728 + 6.2 gcaatctgtg NF-Y 729 744 + 6.85 tctagccaatctggtg Ar 741 762 - 8.13 aaaagttctccaagtccccacc ZNF42_1-4 743 748 + 7.08 tgggga NF-Y 785 800 + 10 atgcaccaatcagcac NF-Y 826 841 + 9.7 atgcaccaatcagcac NF-Y 851 866 + 10.7 acggaccaatcagctc NF-Y 875 890 + 8.67 acagaccaatcagctc NF-Y 899 914 + 10.7 atggaccaatcagctc NF-Y 923 938 + 10.4 atggaccaatcagcag >NM_182908 (1000 bp) CLUSTER 1 Location: 707 to 938 Score: 7.32 NF-Y: 10.6 Ar: 0.321 ZNF42_1-4: 0.083 MYB.ph3: 0.0714 MafB: 0.066 Gfi: 0.0658 GATA3: 0.0634 Pbx: 0.0396 PBF: 0.0338 FOXL1: 0.0332 ID1: 0.0307 Dof2: 0.0272 Gata1: 0.0267 SRY: 0.0242 MNB1A: 0.023 Pax4: 0.0224 FOXC1: 0.0223 cEBP: 0.0219 Sox5: 0.0214 ARR10: 0.021 YY1: 0.0205 HAND1-TCF3: 0.0172 MA0021: 0.017 SP1: 0.0158 Broad-complex_1: 0.013 Broad-complex_4: 0.012 SOX9: 0.0114 RUSH1-alfa: 0.0114 GATA2: 0.0109 Pax2: 0.0104 Hunchback: 0.0102 Macho-1: 0.0098 GAMYB: 0.0096 Snail: 0.00937 Sox17: 0.00934 En1: 0.00933 ESR1: 0.00927 Broad-complex_2: 0.00906 Klf4: 0.00903 SU_h: 0.00873 Foxd3: 0.00857 Agamous: 0.00748 c-ETS: 0.007 HMG-1: 0.00687 deltaEF1: 0.0068 Foxq1: 0.00662 Broad-complex_3: 0.00657 Athb-1: 0.00656 NR3C1: 0.0065 Ubx: 0.00647 ZNF42_5-13: 0.00604 Bapx1: 0.00594 HMG-IY: 0.00585 TBP: 0.00496 Staf: 0.00491 Dorsal_2: 0.00452 SPIB: 0.00446 TCF1: 0.00443 AGL3: 0.0043 HNF4: 0.0043 TAL1-TCF3: 0.00421 FOXD1: 0.00401 SPI1: 0.00397 CF2-II: 0.00357 Nkx2-5: 0.00356 Pax5: 0.0035 TCF11-MafG: 0.00333 Foxa2: 0.00312 FOXI1: 0.0031 E2F1: 0.00271 Dorsal_1: 0.00257 Fos: 0.00256 Arnt-Ahr: 0.00246 ATHB5: 0.0024 RXR-VDR: 0.00203 NR2F1: 0.00193 Chop-cEBP: 0.00185 REL: 0.00152 Prrx2: 0.00148 GABPA: 0.00145 Myb: 0.00139 ELK1: 0.00138 CREB1: 0.00134 RUNX1: 0.00132 SQUA: 0.00112 TEAD: 0.00102 ABI4: 0.0009 E74A: 0.00086 HLF: 0.00083 Myf: 0.000775 Spz1: 0.000714 MYC-MAX: 0.000653 Hox11-CTF1: 0.000602 FOXF2: 0.000585 MAX: 0.000545 NHLH1: 0.000499 Mycn: 0.000466 SRF: 0.00046 Arnt: 0.000458 RORA: 0.000438 TFAP2A: 0.000398 RELA: 0.000379 CFI-USP: 0.000353 Pax6: 0.000319 IRF1: 0.000286 IRF2: 0.000279 USF1: 0.000258 bZIP911: 0.000237 RREB1: 0.000236 NFIL3: 0.000215 MEF2A: 0.000197 Evi1: 0.000139 RORA1: 0.000129 ELK4: 0.0001 NF-kappaB: 9.41e-05 Roaz: 7.09e-05 NFKB1: 5.92e-05 T: 4.54e-05 bZIP910: 3.43e-05 PPARG: 1.71e-05 NR1H2-RXR: 8.97e-06 PPARG-RXRA: 3.08e-06 TP53: 2.6e-06 ATGCACCAATCAGCAATCTGTGTCTAGCCAATCTGGTGGGGACTTGGAGAACTTTTgtgtctagctaaaggattgtaaATGCACCAATCAGCACtctgtgtctagctaaaggtttgtaaATGCACCAATCAGCACtctgtcaaaACGGACCAATCAGCTCtctgtaaaACAGACCAATCAGCTCtctgtaaaATGGACCAATCAGCTCtccataaaATGGACCAATCAGCAG NF-Y 707 722 + 10.6 atgcaccaatcagcaa Pbx 709 720 + 6.35 gcaccaatcagc Gfi 712 721 + 6.41 ccaatcagca MafB 713 720 - 6.16 gctgattg Gfi 719 728 + 6.2 gcaatctgtg NF-Y 729 744 + 6.85 tctagccaatctggtg Ar 741 762 - 8.13 aaaagttctccaagtccccacc ZNF42_1-4 743 748 + 7.08 tgggga NF-Y 785 800 + 10 atgcaccaatcagcac NF-Y 826 841 + 9.7 atgcaccaatcagcac NF-Y 851 866 + 10.7 acggaccaatcagctc NF-Y 875 890 + 8.67 acagaccaatcagctc NF-Y 899 914 + 10.7 atggaccaatcagctc NF-Y 923 938 + 10.4 atggaccaatcagcag >NM_001069 (1000 bp) CLUSTER 1 Location: 941 to 989 Score: 5.97 TBP: 2.77 bZIP910: 0.735 CREB1: 0.35 TCF11-MafG: 0.0604 HLF: 0.0418 ZNF42_1-4: 0.0163 Dorsal_1: 0.00964 Hunchback: 0.00757 Pax2: 0.00582 NFKB1: 0.00564 RXR-VDR: 0.00542 NFIL3: 0.00508 GAMYB: 0.0044 Broad-complex_2: 0.0043 Broad-complex_4: 0.00377 SP1: 0.00335 Ubx: 0.0025 MNB1A: 0.00212 FOXD1: 0.00199 Broad-complex_3: 0.00183 YY1: 0.00177 FOXL1: 0.00156 MafB: 0.00133 Macho-1: 0.0013 RUSH1-alfa: 0.00123 HMG-1: 0.00123 Dof2: 0.0012 bZIP911: 0.00114 TFAP2A: 0.00113 HNF4: 0.000881 PBF: 0.000858 SPI1: 0.000841 En1: 0.000811 GATA2: 0.000765 Nkx2-5: 0.000736 CF2-II: 0.000654 SRY: 0.000638 REL: 0.000608 ELK1: 0.000557 ID1: 0.000524 CFI-USP: 0.000494 ESR1: 0.000463 Foxq1: 0.000422 Snail: 0.000419 AGL3: 0.000384 Spz1: 0.000382 Klf4: 0.000374 ABI4: 0.00037 SOX9: 0.000322 deltaEF1: 0.000317 cEBP: 0.000272 FOXC1: 0.000265 MAX: 0.000258 RORA: 0.000255 GABPA: 0.00023 c-ETS: 0.000221 Dorsal_2: 0.00022 MA0021: 0.000192 Gata1: 0.000176 E74A: 0.000165 Broad-complex_1: 0.000157 HAND1-TCF3: 0.000156 Arnt-Ahr: 0.000141 SQUA: 0.000137 Evi1: 0.000136 Chop-cEBP: 0.000129 GATA3: 0.000121 NF-kappaB: 0.000109 Pax5: 0.000107 ZNF42_5-13: 9.7e-05 ARR10: 7.99e-05 USF1: 7.87e-05 Athb-1: 7.8e-05 Mycn: 6.58e-05 Arnt: 6.02e-05 TCF1: 5.65e-05 MYB.ph3: 5.55e-05 RELA: 4.72e-05 FOXF2: 3.93e-05 Prrx2: 3.85e-05 NR2F1: 3.83e-05 E2F1: 3.39e-05 Bapx1: 3.13e-05 Myb: 2.89e-05 RUNX1: 2.82e-05 ELK4: 2.7e-05 Foxa2: 2.51e-05 NR3C1: 2.39e-05 FOXI1: 2.37e-05 Fos: 2.37e-05 Gfi: 1.88e-05 SPIB: 1.7e-05 MYC-MAX: 1.56e-05 RORA1: 1.5e-05 TP53: 1.48e-05 Foxd3: 1.47e-05 Sox5: 1.42e-05 Agamous: 1.35e-05 HMG-IY: 1.11e-05 Pbx: 9.21e-06 Sox17: 8.91e-06 Staf: 5.86e-06 Pax4: 5.17e-06 IRF1: 4.88e-06 SU_h: 4.84e-06 SRF: 4.51e-06 MEF2A: 4.37e-06 TEAD: 3.39e-06 Hox11-CTF1: 2.37e-06 T: 2.35e-06 PPARG: 1.4e-06 NR1H2-RXR: 1.17e-06 Pax6: 1.06e-06 ATHB5: 8.32e-07 Myf: 8.3e-07 PPARG-RXRA: 4.07e-07 NHLH1: 3.58e-07 TAL1-TCF3: 2.6e-07 Ar: 1.55e-07 RREB1: 1.28e-07 Roaz: 1.12e-07 NF-Y: 8.32e-08 IRF2: 4.39e-08 CGTCATGACGTCACCGGGcagggcGGGTCCCCGGGTATAAAAGACCGAG CREB1 941 952 + 9.92 cgtcatgacgtc TCF11-MafG 942 947 - 8.05 catgac HLF 944 955 - 8.02 ggtgacgtcatg TCF11-MafG 944 949 + 7.24 catgac bZIP910 945 951 + 10.7 atgacgt CREB1 947 958 - 8.33 cccggtgacgtc bZIP910 948 954 - 7.79 gtgacgt RXR-VDR 965 979 + 7.93 gggtccccgggtata Hunchback 973 982 + 7.94 gggtataaaa Broad-complex_2 975 982 - 8.1 ttttatac Broad-complex_4 975 985 + 7.8 gtataaaagac CF2-II 975 984 + 6.15 gtataaaaga FOXD1 975 982 + 7.33 gtataaaa HMG-1 975 983 - 6.55 cttttatac Hunchback 975 984 + 7.8 gtataaaaga TBP 975 989 + 13.4 gtataaaagaccgag HNF4 975 987 + 6.02 gtataaaagaccg Broad-complex_3 976 986 + 7.07 tataaaagacc Dorsal_1 976 987 - 8.81 cggtcttttata FOXL1 976 983 - 6.73 cttttata GAMYB 976 985 + 8.09 tataaaagac RUSH1-alfa 976 983 - 6.43 cttttata Nkx2-5 977 983 + 6.21 ataaaag Dof2 980 985 + 6.5 aaagac MNB1A 980 984 + 7.12 aaaga PBF 980 984 + 6.18 aaaga >NM_007173 (1000 bp) CLUSTER 1 Location: 115 to 270 Score: 5.33 RREB1: 3.14 Myf: 0.691 SRF: 0.561 Fos: 0.476 TAL1-TCF3: 0.471 Gfi: 0.166 SQUA: 0.161 Agamous: 0.152 AGL3: 0.123 Staf: 0.0865 NFKB1: 0.0789 GAMYB: 0.0672 HMG-1: 0.0604 ZNF42_1-4: 0.0574 SPI1: 0.045 Bapx1: 0.0413 Macho-1: 0.041 Pax2: 0.0387 FOXC1: 0.0383 ZNF42_5-13: 0.0373 Klf4: 0.0326 SP1: 0.0323 deltaEF1: 0.031 Pbx: 0.0295 Spz1: 0.0282 Snail: 0.0267 Pax5: 0.0245 En1: 0.0239 NF-kappaB: 0.0159 HAND1-TCF3: 0.0138 YY1: 0.013 NHLH1: 0.0129 MafB: 0.0111 Arnt-Ahr: 0.0108 Ubx: 0.0103 Gata1: 0.00982 FOXD1: 0.00935 Broad-complex_2: 0.00923 TBP: 0.00878 Dorsal_2: 0.00871 c-ETS: 0.00866 TCF11-MafG: 0.00828 GATA3: 0.00724 Sox17: 0.00667 REL: 0.00636 GATA2: 0.00636 GABPA: 0.00607 RUSH1-alfa: 0.0058 ELK1: 0.00565 RUNX1: 0.00564 Broad-complex_1: 0.00559 Prrx2: 0.00524 HNF4: 0.00524 PBF: 0.00516 Nkx2-5: 0.00509 MNB1A: 0.00506 MA0021: 0.00481 MYC-MAX: 0.0045 ABI4: 0.00407 TFAP2A: 0.00391 ARR10: 0.0036 Dorsal_1: 0.00353 E74A: 0.0034 cEBP: 0.0033 Broad-complex_3: 0.00315 Athb-1: 0.00302 RELA: 0.00301 T: 0.00298 SRY: 0.00294 Dof2: 0.00275 CREB1: 0.00271 ID1: 0.0023 NR3C1: 0.00221 Myb: 0.00211 MAX: 0.0021 NR2F1: 0.00203 SPIB: 0.00197 SOX9: 0.00189 Broad-complex_4: 0.00184 FOXL1: 0.00168 Arnt: 0.00145 Pax4: 0.00144 Mycn: 0.00131 TEAD: 0.0013 Sox5: 0.00123 Foxq1: 0.00121 HMG-IY: 0.00104 ESR1: 0.000999 USF1: 0.00097 E2F1: 0.000967 RXR-VDR: 0.000939 CFI-USP: 0.000856 Hox11-CTF1: 0.000754 RORA: 0.000722 MYB.ph3: 0.000676 HLF: 0.000658 Hunchback: 0.000578 FOXI1: 0.000533 ELK4: 0.00053 IRF1: 0.000452 RORA1: 0.000345 bZIP910: 0.000339 Pax6: 0.000296 SU_h: 0.000255 Foxa2: 0.000254 Chop-cEBP: 0.000232 PPARG: 0.000207 bZIP911: 0.000191 NF-Y: 0.000189 FOXF2: 0.00018 Ar: 0.000158 Roaz: 0.000157 NFIL3: 0.000155 ATHB5: 0.000125 Evi1: 0.000125 MEF2A: 0.000119 TCF1: 4.21e-05 Foxd3: 1.8e-05 CF2-II: 1.49e-05 TP53: 1.11e-05 IRF2: 5.2e-06 NR1H2-RXR: 1.65e-06 PPARG-RXRA: 1.1e-06 GACCTTAAATGGCAAGgtctccaGCCTGGTTAGGaGAGGACTCCCCgcacacccccctaccctggCCCCCAACCACCACCACCAAGATAACGACCgcTTGGAGTGATTCAGGGAAGTAGGCCCActggacaaggaggtggctCCACCAGCTGGTGC SRF 115 126 + 9.52 gaccttaaatgg Agamous 116 126 - 6.15 ccatttaaggt AGL3 117 126 + 7.92 ccttaaatgg AGL3 117 126 - 7.05 ccatttaagg Agamous 117 127 + 7.38 ccttaaatggc SQUA 117 130 + 8.45 ccttaaatggcaag Agamous 138 148 - 6.5 cctaaccaggc NFKB1 150 160 - 6.3 ggggagtcctc RREB1 180 199 + 11.8 cccccaaccaccaccaccaa GAMYB 200 209 + 6.2 gataacgacc Pbx 212 223 - 6.65 gaatcactccaa Staf 213 232 - 7.49 tacttccctgaatcactcca Bapx1 213 221 + 6.05 tggagtgat Gfi 215 224 - 8.39 tgaatcactc Pax2 215 222 - 6.84 aatcactc Fos 217 224 + 9.29 gtgattca Fos 218 225 - 6.69 ctgaatca Pax5 219 238 + 6.27 gattcagggaagtaggccca SPI1 225 230 + 6.06 gggaag TAL1-TCF3 257 268 + 9.38 ccaccagctggt Myf 258 269 + 9.62 caccagctggtg Myf 258 269 - 9.62 caccagctggtg TAL1-TCF3 259 270 - 9.3 gcaccagctggt >NM_014297 (1000 bp) CLUSTER 1 Location: 478 to 559 Score: 5.1 Hox11-CTF1: 3.69 CF2-II: 2.47 FOXL1: 0.132 FOXI1: 0.0581 MEF2A: 0.0478 TBP: 0.0354 Macho-1: 0.0128 Foxa2: 0.0123 GAMYB: 0.00856 Broad-complex_2: 0.00818 Foxd3: 0.00667 deltaEF1: 0.0065 AGL3: 0.00646 Snail: 0.00512 SQUA: 0.00498 GATA2: 0.00487 Broad-complex_4: 0.00482 RUSH1-alfa: 0.00478 Ubx: 0.00446 Arnt-Ahr: 0.00412 GATA3: 0.00372 Broad-complex_3: 0.00349 MYC-MAX: 0.00299 Mycn: 0.00299 Pax2: 0.00269 FOXD1: 0.00259 Arnt: 0.00227 ZNF42_5-13: 0.00202 Foxq1: 0.00182 SP1: 0.00176 c-ETS: 0.00175 SRY: 0.00145 Gata1: 0.00138 ELK1: 0.00124 MAX: 0.00121 FOXC1: 0.00118 HAND1-TCF3: 0.00108 ARR10: 0.00104 MA0021: 0.00102 cEBP: 0.000973 Broad-complex_1: 0.00096 Myb: 0.000908 Nkx2-5: 0.000856 Klf4: 0.000811 ELK4: 0.000747 YY1: 0.000739 MNB1A: 0.000728 USF1: 0.00072 PBF: 0.000719 TCF11-MafG: 0.000673 Prrx2: 0.000544 MYB.ph3: 0.00054 MafB: 0.000534 HMG-1: 0.000457 Sox17: 0.000435 Dof2: 0.00043 ZNF42_1-4: 0.000429 En1: 0.000372 Sox5: 0.000368 Hunchback: 0.000255 GABPA: 0.000246 HNF4: 0.000244 Gfi: 0.000234 Bapx1: 0.000231 NFIL3: 0.000228 HMG-IY: 0.00019 ABI4: 0.000187 E74A: 0.00018 bZIP910: 0.000171 FOXF2: 0.000161 TCF1: 0.000159 REL: 0.000156 Athb-1: 0.000133 ID1: 0.000131 SU_h: 0.000127 SOX9: 0.000126 E2F1: 0.0001 HLF: 7.38e-05 SPI1: 6.96e-05 TEAD: 6.74e-05 Chop-cEBP: 6.74e-05 RORA: 6.37e-05 NR2F1: 6.35e-05 Pbx: 6.18e-05 NR3C1: 6.1e-05 Agamous: 6.05e-05 Spz1: 5.18e-05 CREB1: 4.28e-05 Fos: 2.87e-05 RUNX1: 2.61e-05 SPIB: 2.57e-05 TFAP2A: 2.19e-05 Pax5: 2.1e-05 bZIP911: 2.09e-05 Dorsal_1: 1.97e-05 ESR1: 1.54e-05 TAL1-TCF3: 1.48e-05 RREB1: 1.17e-05 NHLH1: 1.14e-05 T: 1.11e-05 Pax6: 1.08e-05 NF-kappaB: 1.04e-05 Pax4: 8.94e-06 Dorsal_2: 8.31e-06 CFI-USP: 7.25e-06 RELA: 6.41e-06 NFKB1: 3.2e-06 RORA1: 3e-06 Myf: 2.45e-06 IRF1: 2.27e-06 Evi1: 1.69e-06 ATHB5: 1.32e-06 SRF: 1.26e-06 RXR-VDR: 8.92e-07 Staf: 8.83e-07 IRF2: 1.88e-07 Roaz: 1.41e-07 NR1H2-RXR: 6.8e-08 NF-Y: 4.65e-08 Ar: 2.42e-08 TP53: 1.25e-08 PPARG-RXRA: 6.25e-09 PPARG: 6.03e-09 GTATATATATATATGTATATAAATATATATATAGatataaATATATATATATAAaatgtcgggtgtgGTGGCAACGTGCCAT CF2-II 478 487 + 8.29 gtatatatat CF2-II 478 487 - 8.02 atatatatac CF2-II 480 489 + 7.48 atatatatat CF2-II 480 489 - 7.48 atatatatat CF2-II 482 491 + 7.48 atatatatat CF2-II 482 491 - 7.48 atatatatat CF2-II 484 493 + 6.78 atatatatgt CF2-II 486 495 + 7.6 atatatgtat FOXI1 494 505 - 6.07 atatatttatat CF2-II 500 509 + 7.56 atatatatat CF2-II 500 509 - 7.56 atatatatat CF2-II 502 511 + 7.35 atatatatag CF2-II 502 511 - 7.17 ctatatatat CF2-II 518 527 + 7.45 atatatatat CF2-II 518 527 - 7.45 atatatatat CF2-II 520 529 + 7.45 atatatatat CF2-II 520 529 - 7.45 atatatatat CF2-II 522 531 + 6.79 atatatataa Hox11-CTF1 545 558 - 11.5 tggcacgttgccac Hox11-CTF1 546 559 + 12.5 tggcaacgtgccat MYC-MAX 547 557 + 6.13 ggcaacgtgcc MYC-MAX 548 558 - 6.52 tggcacgttgc Arnt 550 555 + 6.42 aacgtg >NM_153322 (1000 bp) CLUSTER 1 Location: 593 to 790 Score: 5.02 RREB1: 0.512 Dorsal_2: 0.412 IRF1: 0.405 NF-kappaB: 0.283 NR2F1: 0.224 PPARG-RXRA: 0.209 RELA: 0.189 NFKB1: 0.174 ESR1: 0.148 HNF4: 0.14 REL: 0.132 TAL1-TCF3: 0.131 CFI-USP: 0.113 IRF2: 0.109 HMG-IY: 0.0958 Dorsal_1: 0.0799 TEAD: 0.0766 Ar: 0.0757 HAND1-TCF3: 0.0756 ZNF42_5-13: 0.0721 SPI1: 0.0661 Pax4: 0.0658 deltaEF1: 0.064 NR3C1: 0.061 SPIB: 0.0583 Klf4: 0.0578 Macho-1: 0.0556 SU_h: 0.0534 Arnt: 0.0516 SRY: 0.0513 SP1: 0.0477 Broad-complex_3: 0.0436 c-ETS: 0.0416 MNB1A: 0.0411 Arnt-Ahr: 0.0398 Broad-complex_1: 0.0394 ID1: 0.0346 PBF: 0.0344 Dof2: 0.0334 Broad-complex_4: 0.033 En1: 0.0305 MYC-MAX: 0.0285 HMG-1: 0.0281 ZNF42_1-4: 0.0268 Snail: 0.0268 E74A: 0.0263 GAMYB: 0.0258 TFAP2A: 0.0257 Hunchback: 0.0234 GABPA: 0.0229 Foxa2: 0.0222 ABI4: 0.0208 MA0021: 0.0205 Pax2: 0.02 ELK1: 0.0174 YY1: 0.0161 RUSH1-alfa: 0.0157 MYB.ph3: 0.0153 Gata1: 0.0135 MAX: 0.0135 Broad-complex_2: 0.0133 FOXD1: 0.0133 RUNX1: 0.0117 GATA2: 0.0116 Spz1: 0.0116 ARR10: 0.0113 Pax5: 0.0111 MafB: 0.0106 Myf: 0.01 TCF11-MafG: 0.0098 FOXI1: 0.00964 Mycn: 0.00946 FOXL1: 0.00942 RXR-VDR: 0.0091 USF1: 0.00908 Gfi: 0.00887 Myb: 0.00829 Chop-cEBP: 0.0082 Bapx1: 0.00818 Sox5: 0.00812 Foxd3: 0.00689 Nkx2-5: 0.00667 cEBP: 0.00649 GATA3: 0.00644 RORA: 0.00606 SOX9: 0.00579 Sox17: 0.00557 Ubx: 0.00534 FOXC1: 0.00449 HLF: 0.00417 NR1H2-RXR: 0.00376 ELK4: 0.0032 Foxq1: 0.003 Staf: 0.00282 E2F1: 0.00277 PPARG: 0.00258 bZIP910: 0.00242 CREB1: 0.0021 SQUA: 0.00193 TBP: 0.00185 Agamous: 0.00172 Prrx2: 0.00148 FOXF2: 0.0014 CF2-II: 0.00125 bZIP911: 0.00124 Athb-1: 0.00118 Evi1: 0.00066 Fos: 0.000655 AGL3: 0.000576 Pbx: 0.000534 TCF1: 0.00053 Pax6: 0.000522 Hox11-CTF1: 0.00048 Roaz: 0.00045 NHLH1: 0.000318 NFIL3: 0.000258 T: 0.000218 NF-Y: 0.000104 SRF: 7.46e-05 MEF2A: 3.09e-05 TP53: 2.44e-05 ATHB5: 1.26e-05 RORA1: 8.64e-06 AGGGGAATTCACCATCtgaaccGGGGTCTCGGAGAACGTGACCTCTCACCTTCCAGGGaggtcgccGGGAGGTGCTTGGGGTGGGTggaagcgtgcagTGGCCTCTGCTCATatTTTCTGGAAACCCCTCCgttccctgggtggttttagacgtgcgaaccgcttgtTTTGTTTCCAAAAGCAAAAGATGTTCCGTTG ZNF42_1-4 593 598 + 6.22 agggga SPIB 593 599 + 7.26 aggggaa Dorsal_2 594 603 + 8.84 ggggaattca REL 594 603 + 7.5 ggggaattca NFKB1 594 604 + 7.49 ggggaattcac NFKB1 594 604 - 7.22 gtgaattcccc RELA 594 603 + 6.07 ggggaattca NF-kappaB 595 604 + 9.02 gggaattcac NF-kappaB 595 604 - 7.09 gtgaattccc NFKB1 595 605 + 7.07 gggaattcacc NFKB1 595 605 - 7.28 ggtgaattccc RELA 595 604 + 6.3 gggaattcac RELA 595 604 - 7.66 gtgaattccc Dorsal_2 596 605 - 7.03 ggtgaattcc REL 596 605 - 7.16 ggtgaattcc YY1 603 608 + 6.12 accatc CFI-USP 615 624 + 6.09 ggggtctcgg ESR1 615 632 - 6.77 cacgttctccgagacccc ESR1 620 637 + 7.38 ctcggagaacgtgacctc MYC-MAX 624 634 + 6.25 gagaacgtgac Arnt 627 632 + 6.76 aacgtg CFI-USP 628 637 - 7.08 gaggtcacgt PPARG-RXRA 628 647 - 8.31 tggaaggtgagaggtcacgt NR2F1 631 644 + 7.88 tgacctctcacctt HNF4 631 643 - 7.24 aggtgagaggtca TEAD 639 650 + 6.92 caccttccaggg deltaEF1 639 644 + 6.62 cacctt RREB1 659 678 - 8.35 acccaccccaagcacctccc NR2F1 691 704 + 6.88 tggcctctgctcat HNF4 691 703 - 6.59 tgagcagaggcca HAND1-TCF3 707 716 + 7.31 tttctggaaa Dorsal_1 711 722 - 6.21 gaggggtttcca Dorsal_2 711 720 - 7.96 ggggtttcca Dorsal_2 712 721 - 6.12 aggggtttcc REL 712 721 - 6.81 aggggtttcc RELA 712 721 - 7.53 aggggtttcc ZNF42_5-13 714 723 - 7.04 ggaggggttt Broad-complex_4 760 770 - 7.32 ttggaaacaaa SRY 760 768 - 6.13 ggaaacaaa SQUA 763 776 - 6.03 ttgcttttggaaac HMG-IY 764 779 + 6.07 tttccaaaagcaaaag HMG-IY 765 780 + 10.5 ttccaaaagcaaaaga Broad-complex_1 766 779 + 9.52 tccaaaagcaaaag Agamous 767 777 + 6.02 ccaaaagcaaa Broad-complex_4 767 777 + 6.62 ccaaaagcaaa ID1 767 778 - 9.02 ttttgcttttgg Broad-complex_1 768 781 + 6.51 caaaagcaaaagat IRF2 768 785 + 10.6 caaaagcaaaagatgttc ID1 768 779 - 8.37 cttttgcttttg Ar 769 790 + 10.1 aaaagcaaaagatgttccgttg Broad-complex_3 769 779 + 7.82 aaaagcaaaag Gfi 769 778 + 6.87 aaaagcaaaa Klf4 769 778 + 7.66 aaaagcaaaa IRF1 769 780 + 11.8 aaaagcaaaaga SRY 769 777 + 6.45 aaaagcaaa Broad-complex_3 770 780 + 7.3 aaagcaaaaga Dof2 770 775 + 8.7 aaagca MA0021 770 775 + 8.23 aaagca Klf4 770 779 + 9.48 aaagcaaaag MNB1A 770 774 + 7.63 aaagc PBF 770 774 + 7.59 aaagc NR3C1 770 787 - 9.71 cggaacatcttttgcttt Broad-complex_4 771 781 + 7.43 aagcaaaagat Foxd3 771 782 - 6.46 catcttttgctt HMG-1 771 779 - 7.21 cttttgctt Foxa2 771 782 - 8.02 catcttttgctt Myf 771 782 + 7.59 aagcaaaagatg NR3C1 771 788 + 7.8 aagcaaaagatgttccgt TAL1-TCF3 773 784 + 6.09 gcaaaagatgtt TAL1-TCF3 775 786 - 10.1 ggaacatctttt Dof2 776 781 + 6.97 aaagat MNB1A 776 780 + 7.18 aaaga PBF 776 780 + 6.24 aaaga >NM_153449 (1000 bp) CLUSTER 1 Location: 163 to 720 Score: 5.23 MYB.ph3: 1.74 Foxd3: 1.68 ESR1: 1.05 Chop-cEBP: 0.72 MEF2A: 0.624 FOXI1: 0.528 Agamous: 0.428 Spz1: 0.414 HMG-IY: 0.287 Broad-complex_2: 0.276 TFAP2A: 0.261 AGL3: 0.223 HMG-1: 0.218 REL: 0.215 ARR10: 0.211 Snail: 0.204 ABI4: 0.198 MNB1A: 0.181 Pax4: 0.171 HLF: 0.17 Myb: 0.161 MA0021: 0.152 SP1: 0.148 Staf: 0.14 GATA3: 0.139 Macho-1: 0.137 Dof2: 0.133 PBF: 0.131 Broad-complex_1: 0.127 IRF2: 0.126 Foxa2: 0.125 GATA2: 0.121 En1: 0.111 Broad-complex_4: 0.109 Dorsal_2: 0.108 RUSH1-alfa: 0.107 NF-kappaB: 0.104 ELK1: 0.0979 Prrx2: 0.0979 deltaEF1: 0.0958 Dorsal_1: 0.0923 NR2F1: 0.0905 Fos: 0.0899 c-ETS: 0.089 Gata1: 0.0888 ZNF42_5-13: 0.0874 Hunchback: 0.0852 ZNF42_1-4: 0.0847 Ubx: 0.0823 NR3C1: 0.0779 NHLH1: 0.0778 SQUA: 0.0759 RORA: 0.0702 E2F1: 0.0672 FOXL1: 0.064 MafB: 0.0582 YY1: 0.0577 SPI1: 0.0569 Gfi: 0.0565 ID1: 0.0522 Pax2: 0.0516 CFI-USP: 0.0516 cEBP: 0.0497 FOXC1: 0.0488 Nkx2-5: 0.0484 Athb-1: 0.048 RUNX1: 0.0476 HNF4: 0.0462 RELA: 0.0422 SRY: 0.0414 Broad-complex_3: 0.0403 GAMYB: 0.0403 Klf4: 0.0402 Bapx1: 0.0384 E74A: 0.0381 NFKB1: 0.0376 SOX9: 0.0374 Arnt-Ahr: 0.0369 Myf: 0.0353 Pax5: 0.0333 HAND1-TCF3: 0.0318 Roaz: 0.0304 TCF11-MafG: 0.0302 SPIB: 0.0281 CF2-II: 0.0279 GABPA: 0.0247 TCF1: 0.0227 Sox5: 0.0224 IRF1: 0.022 Evi1: 0.0219 FOXD1: 0.0213 Foxq1: 0.0212 T: 0.0176 TEAD: 0.0164 Arnt: 0.016 Mycn: 0.0157 Sox17: 0.0149 SU_h: 0.0145 ELK4: 0.014 MYC-MAX: 0.013 RORA1: 0.0121 MAX: 0.012 TBP: 0.00844 USF1: 0.00789 RXR-VDR: 0.00602 bZIP910: 0.00586 CREB1: 0.00557 Pbx: 0.00535 FOXF2: 0.00421 PPARG: 0.0034 NFIL3: 0.0034 PPARG-RXRA: 0.00339 Pax6: 0.00315 Ar: 0.00267 ATHB5: 0.00267 NF-Y: 0.00219 RREB1: 0.00217 NR1H2-RXR: 0.00194 TAL1-TCF3: 0.00152 Hox11-CTF1: 0.0015 TP53: 0.000408 SRF: 0.000271 bZIP911: 0.000173 GAGAACGACCGCGGGGCTTTTCatCCAAAAAGAGCtcctgagtctgaaaTAACTGTTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTtttGAGACGGAATcttgaGCTGTTACCCAGGCTGGAGTGCAATGGCGGAGTTCAGCTCACTGTAACCTCCGCCTCCtgggttcaagcgattctCCTGTCTCAGCCTCCCAAGCAGTTGGGActatagGAGCGCACCGccaagcccCCTAATTTTGTTATTTTTAGTAAAGACTgGGTTTCGCCATGttggccaggctggtctcGAACCCCTGACCTCAAGttatccgctctcctcggcctcCAAAAGTGCTAGGATTACAGGTGTGAGCCAccgtgcgcggcccgAAATAACTCTTTaCAGGATCTcgcccTGGGCCTTCCcagcccagccggcccgcccgcggggatagcccgggcaCTATCTccctgctgcaggcggtGAGGGGCTCGGGTATCTTTGAAAATAGATACGTTCACACCCTCCTAACGGCggcgccaagggtggtgggtcCCAAAACTGTTT HMG-1 163 171 - 7.46 gtcgttctc TFAP2A 171 179 - 7.41 gccccgcgg NF-kappaB 175 184 + 6.19 ggggcttttc REL 175 184 + 7.02 ggggcttttc AGL3 187 196 + 8.18 ccaaaaagag Agamous 187 197 + 8.71 ccaaaaagagc Hunchback 187 196 + 6.55 ccaaaaagag MEF2A 187 196 - 6.2 ctctttttgg MYB.ph3 212 220 + 7.76 taactgttt Foxd3 218 229 + 7.26 ttttgtttgttt FOXI1 218 229 + 7.16 ttttgtttgttt Foxd3 222 233 + 8.72 gtttgtttgttt FOXI1 222 233 + 7.67 gtttgtttgttt Foxd3 226 237 + 8.62 gtttgtttgttt FOXI1 226 237 + 7.57 gtttgtttgttt Foxd3 230 241 + 8.46 gtttgtttgttt FOXI1 230 241 + 7.4 gtttgtttgttt Foxd3 234 245 + 8.35 gtttgtttgttt FOXI1 234 245 + 7.3 gtttgtttgttt Foxd3 238 249 + 8.29 gtttgtttgttt FOXI1 238 249 + 7.24 gtttgtttgttt Foxd3 242 253 + 8.38 gtttgtttgttt FOXI1 242 253 + 7.32 gtttgtttgttt Foxd3 246 257 + 8.34 gtttgtttgttt FOXI1 246 257 + 7.29 gtttgtttgttt ELK1 261 270 + 6.21 gagacggaat Spz1 276 286 - 8.05 tgggtaacagc Staf 278 297 + 6.78 tgttacccaggctggagtgc Chop-cEBP 292 303 + 9.03 gagtgcaatggc NR2F1 298 311 - 6.06 tgaactccgccatt ESR1 309 326 + 9.43 tcagctcactgtaacctc ESR1 310 327 - 6.25 ggaggttacagtgagctg ZNF42_5-13 324 333 - 6.51 ggaggcggag Staf 351 370 + 6.6 cctgtctcagcctcccaagc NHLH1 367 378 - 6.52 tcccaactgctt Myb 368 375 + 7.24 agcagttg ABI4 385 394 - 6.95 cggtgcgctc Agamous 403 413 + 6.45 cctaattttgt Prrx2 405 409 - 6.97 aatta Broad-complex_1 407 420 - 7.97 aaaaataacaaaat HMG-IY 407 422 - 9.33 ctaaaaataacaaaat Foxd3 408 419 + 7.52 ttttgttatttt SQUA 409 422 - 7.08 ctaaaaataacaaa SRY 409 417 - 6.09 aataacaaa MEF2A 413 422 + 10.1 ttatttttag SQUA 413 426 + 7.03 ttatttttagtaaa Hunchback 415 424 - 6.47 tactaaaaat Broad-complex_4 420 430 + 6.77 tagtaaagact MNB1A 424 428 + 6.07 aaaga HLF 432 443 + 7.15 ggtttcgccatg Macho-1 461 469 - 6 caggggttc RORA 468 477 - 6.45 cttgaggtca IRF2 499 516 + 7.64 caaaagtgctaggattac MA0021 501 506 + 7.2 aaagtg MNB1A 501 505 + 6.03 aaagt PBF 501 505 + 6.45 aaagt Chop-cEBP 509 520 - 6.2 acctgtaatcct Spz1 509 519 + 6.79 aggattacagg Snail 516 521 + 7.94 caggtg deltaEF1 516 521 - 6.86 cacctg Fos 521 528 + 6.33 gtgagcca Broad-complex_2 543 550 - 6.37 agttattt MYB.ph3 546 554 + 6.99 taactcttt ARR10 556 563 - 7.11 agatcctg REL 569 578 + 6.12 tgggccttcc GATA3 616 621 - 6.81 agatag Pax4 638 667 - 6.64 tatctattttcaaagatacccgagcccctc NR2F1 649 662 + 6.02 gtatctttgaaaat Pax4 649 678 + 6.18 gtatctttgaaaatagatacgttcacaccc Broad-complex_1 651 664 + 7.75 atctttgaaaatag Dof2 651 656 - 6.16 aaagat MNB1A 652 656 - 6.06 aaaga Broad-complex_4 655 665 + 7.02 ttgaaaataga HMG-IY 655 670 + 7.36 ttgaaaatagatacgt MEF2A 655 664 - 7.33 ctattttcaa SQUA 655 668 + 6.95 ttgaaaatagatac FOXL1 656 663 + 6.26 tgaaaata ID1 656 667 - 6.79 tatctattttca Broad-complex_1 658 671 + 6.24 aaaatagatacgtt Pax4 658 687 + 7.94 aaaatagatacgttcacaccctcctaacgg NR3C1 658 675 + 6.3 aaaatagatacgttcaca Broad-complex_2 659 666 - 9.06 atctattt CF2-II 659 668 - 6.59 gtatctattt FOXI1 659 670 - 7.5 acgtatctattt Foxa2 659 670 - 7.88 acgtatctattt MYB.ph3 659 667 - 7.26 tatctattt Pax4 659 688 + 6.22 aaatagatacgttcacaccctcctaacggc FOXL1 660 667 + 6.98 aatagata ARR10 663 670 + 7.27 agatacgt Agamous 709 719 + 7.25 ccaaaactgtt MYB.ph3 712 720 + 9.8 aaactgttt MYB.ph3 712 720 - 9.28 aaacagttt >NM_004040 (1000 bp) CLUSTER 1 Location: 435 to 977 Score: 6.72 RREB1: 2.23 NF-Y: 1.62 MEF2A: 1.38 Pbx: 1.06 FOXI1: 0.74 Myf: 0.706 SQUA: 0.637 IRF1: 0.551 HMG-IY: 0.34 RUNX1: 0.307 ABI4: 0.26 ZNF42_5-13: 0.252 Klf4: 0.251 AGL3: 0.242 Bapx1: 0.179 Macho-1: 0.169 ZNF42_1-4: 0.156 Broad-complex_1: 0.133 Foxd3: 0.132 TFAP2A: 0.132 GABPA: 0.129 E74A: 0.127 Broad-complex_3: 0.126 Evi1: 0.112 Gfi: 0.112 SPI1: 0.0988 ID1: 0.0932 SP1: 0.0919 Foxq1: 0.085 RELA: 0.0833 FOXL1: 0.0829 MA0021: 0.0818 MNB1A: 0.08 SOX9: 0.0734 SRY: 0.0714 PBF: 0.069 HAND1-TCF3: 0.0682 Arnt-Ahr: 0.0681 Pax5: 0.0674 Dorsal_2: 0.0665 Dorsal_1: 0.0649 TBP: 0.063 Pax4: 0.0625 MafB: 0.0615 Broad-complex_4: 0.0611 Nkx2-5: 0.0566 Hunchback: 0.0554 SU_h: 0.0551 RUSH1-alfa: 0.0537 c-ETS: 0.0514 Pax2: 0.0513 En1: 0.0512 NFKB1: 0.0495 GATA3: 0.0495 Dof2: 0.0463 Arnt: 0.0459 REL: 0.0456 Foxa2: 0.0442 cEBP: 0.0435 HMG-1: 0.0426 deltaEF1: 0.0399 ELK1: 0.0394 Agamous: 0.0384 E2F1: 0.0376 GAMYB: 0.0366 ESR1: 0.0352 Fos: 0.0333 Sox5: 0.0323 Gata1: 0.0321 MAX: 0.0312 Spz1: 0.031 Staf: 0.0293 Snail: 0.0293 FOXD1: 0.0279 YY1: 0.0279 SPIB: 0.0279 Broad-complex_2: 0.0263 NHLH1: 0.0218 ARR10: 0.0212 Ubx: 0.0211 CFI-USP: 0.0183 GATA2: 0.0182 FOXC1: 0.0177 FOXF2: 0.0168 NF-kappaB: 0.0167 TCF11-MafG: 0.0154 NR3C1: 0.0151 CREB1: 0.0149 HNF4: 0.0142 PPARG: 0.0117 Myb: 0.0116 ELK4: 0.0108 MYB.ph3: 0.00968 Athb-1: 0.00968 HLF: 0.00964 USF1: 0.00953 MYC-MAX: 0.00906 Prrx2: 0.00885 Sox17: 0.00879 Chop-cEBP: 0.00862 Mycn: 0.00805 NFIL3: 0.00787 IRF2: 0.00679 TEAD: 0.00581 RORA: 0.00522 NR2F1: 0.0043 ATHB5: 0.00364 TCF1: 0.00359 TAL1-TCF3: 0.00356 CF2-II: 0.0025 Ar: 0.00233 Pax6: 0.0021 Hox11-CTF1: 0.00152 RXR-VDR: 0.000911 SRF: 0.000843 bZIP910: 0.000688 Roaz: 0.000684 RORA1: 0.00019 T: 0.000118 TP53: 6.73e-05 bZIP911: 6.45e-05 NR1H2-RXR: 1.17e-06 PPARG-RXRA: 1.11e-06 CCTAAACCACAGGAGgggccacctccAAAAGAAAAGAGAAAACACtcttgtttgggaacaaaAGTGTGTGTGTGGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTGTTTATTTAAAAACAAAACCACGTTAaaagagCTGCCCCTCCCCCACAGGCCCGACCACCCGccGGGAGTTTGCCAGGAAGAGgggcaattctgaatgggagtcgccaacgccccaCTGAGTGAAgcctgtctcggaaccgctcgcccagaccctggaggctccagacagccagctcccggaccccgcgcgcaaacgctgcggcgaaggaggggacccgggtaccgccagagccccgcagCGGCAGCAGCAGcgcggactccccggtCGCTGCCTCTcccagcccggcggcctgggCCGTCAATCAAGCtggccctgccccgccctcgggctgcagggGGCGGCCAATCAGAGCtaagctccgcagcgatgagctcagccggCTGGTTTCCCATTGGACGGCTATATTAAGAAAGTGGccGGACTCTTTAAATAG Foxq1 435 445 - 6.1 tgtggtttagg Myf 438 449 + 6.04 aaaccacaggag RUNX1 439 447 - 8.04 cctgtggtt Klf4 461 470 + 7.5 aaaagaaaag HMG-IY 461 476 + 6.7 aaaagaaaagagaaaa HMG-IY 462 477 + 8.25 aaagaaaagagaaaac Evi1 463 476 + 7.77 aagaaaagagaaaa HMG-IY 464 479 + 6.94 agaaaagagaaaacac ID1 464 475 - 6.75 tttctcttttct IRF1 466 477 + 6.75 aaaagagaaaac RREB1 497 516 - 9.71 acacaccccacacacacact RREB1 499 518 - 8.55 acacacaccccacacacaca RREB1 501 520 - 7.13 acacacacaccccacacaca RREB1 502 521 - 7.27 cacacacacaccccacacac RREB1 503 522 - 6.97 acacacacacaccccacaca RREB1 504 523 - 6.6 cacacacacacaccccacac RREB1 505 524 - 6.25 acacacacacacaccccaca RREB1 506 525 - 6.39 cacacacacacacaccccac RREB1 508 527 - 7.77 cacacacacacacacacccc RREB1 510 529 - 7.71 cacacacacacacacacacc RREB1 512 531 - 8.04 cacacacacacacacacaca RREB1 514 533 - 8.05 cacacacacacacacacaca RREB1 516 535 - 8.12 cacacacacacacacacaca RREB1 518 537 - 8.11 cacacacacacacacacaca Pax4 520 549 - 6.73 aataaacagacacacacacacacacacaca RREB1 520 539 - 8.13 cacacacacacacacacaca HMG-IY 531 546 - 6.58 aaacagacacacacac FOXI1 535 546 + 6.3 gtgtgtctgttt HMG-IY 535 550 - 7.25 aaataaacagacacac Foxq1 539 549 + 7.5 gtctgtttatt Foxd3 539 550 + 8.85 gtctgtttattt FOXI1 539 550 + 10.3 gtctgtttattt Foxa2 539 550 + 7.68 gtctgtttattt FOXF2 540 553 - 7.05 tttaaataaacaga FOXD1 541 548 - 6.31 ataaacag Broad-complex_4 544 554 - 6.07 ttttaaataaa Broad-complex_1 548 561 + 8.45 tttaaaaacaaaac Broad-complex_4 549 559 + 7.04 ttaaaaacaaa IRF1 551 562 + 9.09 aaaaacaaaacc SRY 551 559 + 6.34 aaaaacaaa Broad-complex_3 552 562 + 7.24 aaaacaaaacc MAX 559 568 + 6.26 aaccacgtta Arnt 562 567 - 6.62 aacgtg ZNF42_5-13 575 584 - 7.04 ggaggggcag Klf4 579 588 - 6.75 tgggggaggg ZNF42_1-4 582 587 - 6.48 ggggga RREB1 583 602 + 6.78 cccccacaggcccgaccacc Macho-1 596 604 - 6.25 cgggtggtc RELA 607 616 + 6.46 gggagtttgc GABPA 616 625 + 7.15 ccaggaagag E74A 617 623 + 7.09 caggaag SPI1 618 623 + 6.03 aggaag Bapx1 659 667 + 7.2 ctgagtgaa Myf 783 794 + 8.76 cggcagcagcag ABI4 810 819 + 7.46 cgctgcctct Pbx 839 850 + 9.83 ccgtcaatcaag Fos 841 848 + 6.03 gtcaatca Gfi 842 851 + 6.11 tcaatcaagc GATA3 843 848 - 6.56 tgattg NF-Y 881 896 + 10.6 ggcggccaatcagagc Gfi 886 895 + 8.27 ccaatcagag GATA3 887 892 - 6.18 tgattg Dorsal_2 925 934 + 6.02 ctggtttccc ZNF42_5-13 929 938 - 6.8 caatgggaaa NF-Y 929 944 - 8.1 gccgtccaatgggaaa SQUA 940 953 - 6.14 cttaatatagccgt Agamous 943 953 - 6.04 cttaatatagc AGL3 944 953 + 8.05 ctatattaag AGL3 944 953 - 8.93 cttaatatag MEF2A 944 953 + 9.16 ctatattaag SQUA 944 957 + 10.8 ctatattaagaaag TBP 944 958 + 7.23 ctatattaagaaagt Broad-complex_3 945 955 + 6.92 tatattaagaa FOXL1 945 952 - 8.11 ttaatata cEBP 945 956 - 7.07 tttcttaatata Broad-complex_1 946 959 + 8.12 atattaagaaagtg Broad-complex_4 946 956 + 6.6 atattaagaaa NFIL3 946 956 - 6.37 tttcttaatat Nkx2-5 946 952 - 7.03 ttaatat TBP 946 960 + 6.37 atattaagaaagtgg Ubx 948 951 - 6.28 taat MA0021 954 959 + 6.94 aaagtg MNB1A 954 958 + 6.01 aaagt PBF 954 958 + 6.43 aaagt TBP 963 977 - 7.39 ctatttaaagagtcc MNB1A 967 971 - 6.14 aaaga AGL3 968 977 + 8.63 ctttaaatag AGL3 968 977 - 7.76 ctatttaaag MEF2A 968 977 - 10.8 ctatttaaag FOXL1 969 976 + 7.2 tttaaata Sequence file: seqs.txt (339 sequences) Matrix file: /v/solaris9/appl/molbio/ClusterBuster/jaspar2005core.txt (123 matrices) Expected gap: 35 Range for local abundances: 100 Lowercase filtering OFF Pseudocount: 0.375 Cluster score threshold: 5 Motif score threshold: 6