Prints the number of tag sequences matching for different numbers of mismatches.
Prints the number of tag (i.e. primer/adapter) sequences matching for different numbers of mismatches.
Input can be a FASTQ file or a FASTA file.
No trimming will be performed.
The output is a tab-delimited text file.
This tool uses the TagCleaner package. Please cite the article:
Schmieder R, Lim YW, Rohwer F, Edwards R, 2010. TagCleaner: Identification and removal of tag sequences from genomic and metagenomic datasets. BMC Bioinformatics. 2010, 11:341.
Please see the TagCleaner homepage for more details.