GATK4 -Filter Mutect2 calls

Description

Filter variants in a Mutect2 VCF callset.

Parameters

Details

Filter variants in a Mutect2 VCF callset.

Based on GATK4 FilterMutectCalls tool. For more detailed information, see GATK documentation,

Output

• VCF file with filtered calls
• TSV file with statistics

References

This tool is based on the GATK4 package.

For instructions on citing GATK4, please see GATK FAQ