Quality control / Read quality statistics with FASTX

Description

Given a FASTQ file, this tool creates a quality statistics report for the reads.

Parameters

None.

Details

The quality report contains information such as the minimum, maximum, mean, median and inter-quartile range of quality values in each position (cycle) of the reads. Also the number of positions (the length of reads) and the number of A, T, C and G in each position is listed.

Output

A table containing the quality statistics report.

Reference

This tool is based on the Quality statistics tool of the FASTX package.