Read quality with MultiQC for many FASTQ files


This tool runs FastQC on multiple FASTQ files, and then combines the reports using MultiQC.




Input can be one or more individual FASTQ files or one or more tar files containing FASTQ files. Files can be gzipped. Please make sure you don't have duplicate FASTQ file names.


An html report with plots and tables produced by the analysis modules. Please note that you have to select the visualization option "Open in external browser" or "Open in new tab". Please see the MultiQC tutorial video for details.


This tool is based on the FastQC package by Simon Andrews et al., and the MultiQC package by Philip Ewels et al.