Remove redundant sequences

Description

Remove redundant sequences from an input set

This tool use programscd-hit(proteins) and cd-hit-est(nucleotides) to remove redundancy from an input sequence set. User should define the input sequence set type (nucleotide or protein) and a threshold of sequence identity (e.g. 90%).

The input sequences must be in fasta format. Note that this tool reads just one input file, that should contain all the sequences to be analyzed.

• non_redundat.fasta contain the non-redundant sequence set in fasta format.
• sequence_clusters.txt contain information of the clustering of the sequences showing

For more details, please check the manual pages of cd-hit command.