Matching genomic regions / Remove overlapping regions

Description

Given two BED files, this tool returns those regions from file A which do not have overlap with the regions in file B. Also known as subtraction.

Parameters

Minimum number of overlapping bases (1-1000000000) [1]

Details

The orignal, whole regions from file A are returned. If you allow some overlapping bases and would like to get only those parts of A regions which don't overlap, please use the tool "Subtract BED".

Output

Output is a BED file.

References

This tool uses an in-house Java code.